Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   K6J86_RS05020 Genome accession   NZ_AP024627
Coordinates   981419..982066 (+) Length   215 a.a.
NCBI ID   WP_014479290.1    Uniprot ID   -
Organism   Bacillus subtilis strain BEST3136     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 976419..987066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J86_RS05005 (BsBEST3136_09300) glpD 976590..978257 (+) 1668 WP_014479287.1 glycerol-3-phosphate dehydrogenase -
  K6J86_RS05010 (BsBEST3136_09310) pgcA 978389..980134 (+) 1746 WP_014479288.1 phosphoglucomutase -
  K6J86_RS05015 (BsBEST3136_09320) yhcY 980283..981422 (+) 1140 WP_014479289.1 two-component system sensor histidine kinase YhcY -
  K6J86_RS05020 (BsBEST3136_09330) vraR 981419..982066 (+) 648 WP_014479290.1 two-component system response regulator YhcZ Regulator
  K6J86_RS05025 (BsBEST3136_09340) yhdA 982063..982587 (+) 525 WP_014479291.1 FMN-dependent NADPH-azoreductase -
  K6J86_RS05030 (BsBEST3136_09350) yhdB 982602..982844 (-) 243 WP_003233373.1 YhdB family protein -
  K6J86_RS05035 (BsBEST3136_09360) yhdC 983045..983368 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  K6J86_RS05040 (BsBEST3136_09370) lytF 983410..984876 (-) 1467 WP_221251757.1 peptidoglycan endopeptidase -
  K6J86_RS05045 (BsBEST3136_09380) nsrR 985029..985469 (-) 441 WP_003245378.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24135.75 Da        Isoelectric Point: 6.3034

>NTDB_id=74455 K6J86_RS05020 WP_014479290.1 981419..982066(+) (vraR) [Bacillus subtilis strain BEST3136]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=74455 K6J86_RS05020 WP_014479290.1 981419..982066(+) (vraR) [Bacillus subtilis strain BEST3136]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACCGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.409

Multiple sequence alignment