Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | QAD58_RS00305 | Genome accession | NZ_CP122956 |
| Coordinates | 66399..66974 (+) | Length | 191 a.a. |
| NCBI ID | WP_286448413.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BT112 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 61399..71974
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAD58_RS00280 (QAD58_00280) | uvrD | 62087..64135 (+) | 2049 | WP_286448410.1 | DNA helicase UvrD | - |
| QAD58_RS00285 (QAD58_00285) | flgA | 64132..64788 (+) | 657 | WP_286448411.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| QAD58_RS00290 (QAD58_00290) | - | 64798..65361 (+) | 564 | WP_000780124.1 | UbiX family flavin prenyltransferase | - |
| QAD58_RS00295 (QAD58_00295) | coaD | 65361..65834 (+) | 474 | WP_140472121.1 | pantetheine-phosphate adenylyltransferase | - |
| QAD58_RS00300 (QAD58_00300) | tmk | 65836..66411 (+) | 576 | WP_286448412.1 | dTMP kinase | - |
| QAD58_RS00305 (QAD58_00305) | comFC | 66399..66974 (+) | 576 | WP_286448413.1 | ComF family protein | Machinery gene |
| QAD58_RS00310 (QAD58_00310) | - | 67007..69046 (+) | 2040 | WP_286448414.1 | N-6 DNA methylase | - |
| QAD58_RS00315 (QAD58_00315) | - | 69043..70294 (+) | 1252 | Protein_59 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21295.92 Da Isoelectric Point: 9.4455
>NTDB_id=744546 QAD58_RS00305 WP_286448413.1 66399..66974(+) (comFC) [Helicobacter pylori strain BT112]
MRCLTCLKLSFKPLCLNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLGFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE
MRCLTCLKLSFKPLCLNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLGFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=744546 QAD58_RS00305 WP_286448413.1 66399..66974(+) (comFC) [Helicobacter pylori strain BT112]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCTTAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTTATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCTGGGAAAAGCTTAG
GATTTCGCGCCAACAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACACAAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCTTAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTTATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCTGGGAAAAGCTTAG
GATTTCGCGCCAACAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACACAAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
92.67 |
100 |
0.927 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.082 |
100 |
0.366 |