Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | QAP00_RS00270 | Genome accession | NZ_CP122949 |
| Coordinates | 59831..60406 (+) | Length | 191 a.a. |
| NCBI ID | WP_309256553.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BS22 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 54831..65406
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAP00_RS00245 (QAP00_00245) | uvrD | 55522..57567 (+) | 2046 | WP_309256551.1 | DNA helicase UvrD | - |
| QAP00_RS00250 (QAP00_00250) | flgA | 57564..58220 (+) | 657 | WP_050853984.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| QAP00_RS00255 (QAP00_00255) | - | 58230..58793 (+) | 564 | WP_024422431.1 | UbiX family flavin prenyltransferase | - |
| QAP00_RS00260 (QAP00_00260) | coaD | 58793..59266 (+) | 474 | WP_033589676.1 | pantetheine-phosphate adenylyltransferase | - |
| QAP00_RS00265 (QAP00_00265) | tmk | 59268..59843 (+) | 576 | WP_309256552.1 | dTMP kinase | - |
| QAP00_RS00270 (QAP00_00270) | comFC | 59831..60406 (+) | 576 | WP_309256553.1 | ComF family protein | Machinery gene |
| QAP00_RS00275 (QAP00_00275) | - | 60439..60825 (+) | 387 | Protein_53 | VRR-NUC domain-containing protein | - |
| QAP00_RS00280 (QAP00_00280) | - | 60816..61583 (-) | 768 | Protein_54 | Eco47II family restriction endonuclease | - |
| QAP00_RS00285 (QAP00_00285) | dcm | 61552..62583 (-) | 1032 | WP_350315407.1 | DNA (cytosine-5-)-methyltransferase | - |
| QAP00_RS00290 (QAP00_00290) | - | 62633..63763 (+) | 1131 | WP_309257083.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21348.99 Da Isoelectric Point: 9.2848
>NTDB_id=744265 QAP00_RS00270 WP_309256553.1 59831..60406(+) (comFC) [Helicobacter pylori strain BS22]
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDKTLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDKTLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=744265 QAP00_RS00270 WP_309256553.1 59831..60406(+) (comFC) [Helicobacter pylori strain BS22]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAACTTTAGACTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCTTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCAATCGCTCTTTG
CAGTGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAACTTTAGACTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCTTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCAATCGCTCTTTG
CAGTGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |