Detailed information NTG0074408

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: K5706_RS13165
• Genome accession: NZ_AP019849
• Coordinates: 2900309..2901313 (+)
• Length: 334 a.a.
• NCBI ID: WP_128811839.1
• Uniprot ID: -
• Organism: Vibrio alfacsensis strain 04Ya249
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2895309..2906313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5706_RS13140 (VA249_24690)	rplD	2895331..2895933 (-)	603	WP_211915506.1	50S ribosomal protein L4	-
K5706_RS13145 (VA249_24700)	rplC	2895951..2896580 (-)	630	WP_211915507.1	50S ribosomal protein L3	-
K5706_RS13150 (VA249_24710)	rpsJ	2896595..2896906 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
K5706_RS13155 (VA249_24720)	rpmE	2897384..2897605 (-)	222	WP_128811835.1	50S ribosomal protein L31	-
K5706_RS13160 (VA249_24730)	priA	2897903..2900104 (+)	2202	WP_221070302.1	primosomal protein N'	-
K5706_RS13165 (VA249_24740)	cytR	2900309..2901313 (+)	1005	WP_128811839.1	DNA-binding transcriptional regulator CytR	Regulator
K5706_RS13170 (VA249_24750)	-	2901493..2902035 (+)	543	WP_221070304.1	SPOR domain-containing protein	-
K5706_RS13175 (VA249_24760)	hslV	2902201..2902752 (+)	552	WP_038864894.1	ATP-dependent protease subunit HslV	-
K5706_RS13180 (VA249_24770)	hslU	2902782..2904113 (+)	1332	WP_221070307.1	HslU--HslV peptidase ATPase subunit	-
K5706_RS13185 (VA249_24780)	-	2904426..2905343 (+)	918	WP_221070309.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
K5706_RS13190 (VA249_24790)	rraA	2905420..2905926 (+)	507	WP_221070311.1	ribonuclease E activity regulator RraA	-
K5706_RS13195 (VA249_24800)	zapB	2906043..2906285 (-)	243	WP_211915513.1	cell division protein ZapB	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36764.15 Da
• Isoelectric Point: 6.1612

>NTDB_id=74408 K5706_RS13165 WP_128811839.1 2900309..2901313(+) (cytR) [Vibrio alfacsensis strain 04Ya249]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRQRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTAAFEAVNYLTHLGHKRIAQVSGPETAVLCQFRQQGYQQALRRAGITQNAQYSVVTDFSFEGGAQAVRKLLELSEPPTA
LFCHCDTMAIGAIQEAKRLGWRVPQDLSVVGFDDIQFAQYCDPPLTTVSQPRYEIGRQAMLMMLELLKGHDVHSGSRLLD
TKLVVRGSAAPPLR

Nucleotide

• Length: 1005 bp

>NTDB_id=74408 K5706_RS13165 WP_128811839.1 2900309..2901313(+) (cytR) [Vibrio alfacsensis strain 04Ya249]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGGGTTTCGACAGCGACAGTTTCACGAGCGCTCATGAACCCAGAAAA
AGTCTCATCTTCCACCAGACAACGTGTTGAAGATGCCGTACTTGAGGCTGGCTATTCTCCAAATTCATTAGCACGCAATT
TACGTAGAAATGAATCAAAAACCATTGTCACTATAGTGCCGGACATCTGTGATCCTTATTTTTCGGAGATCATTCGCGGT
ATCGAAGATGCCGCGATGGAGCATGGCTACTTAGTTCTACTTGGCGATAGCGGGCAGCAGAAAAAGCGTGAGAGCTCATT
CGTCAACTTAGTCTTTACCAAACAAGCCGATGGCATGTTATTGCTAGGTACCGACCTGCCATTTGATGTCAGCAAACCTG
AACAGAAGAATTTGCCTCCTATGGTCATGGCATGTGAGTTCGCCCCTGAGCTTGAACTGCCAACCGTGCACATTGATAAC
CTCACCGCAGCTTTTGAAGCCGTCAACTATCTCACTCACCTCGGACATAAGCGAATCGCACAAGTGTCTGGCCCAGAGAC
GGCTGTGCTTTGTCAATTCCGCCAACAAGGTTATCAGCAAGCACTGCGCCGCGCTGGCATTACTCAGAATGCACAATACA
GCGTAGTTACCGACTTCTCTTTCGAGGGTGGTGCCCAAGCGGTGCGTAAGCTACTCGAGCTTTCCGAGCCACCAACCGCC
CTATTTTGTCATTGTGACACGATGGCGATTGGCGCGATCCAAGAAGCAAAACGGCTTGGTTGGCGAGTACCTCAAGATCT
GTCTGTCGTCGGTTTTGATGATATTCAGTTTGCTCAATACTGCGATCCACCGCTAACAACCGTTTCTCAGCCTCGTTACG
AGATTGGCCGCCAAGCCATGTTAATGATGTTGGAGCTCCTTAAAGGCCATGATGTGCACTCAGGCTCTCGTCTACTTGAT
ACCAAACTTGTCGTACGTGGCAGTGCAGCGCCACCGTTGAGATAG

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	94.012	100	0.94
cytR	Vibrio cholerae C6706	89.458	99.401	0.889