Detailed information NTG0074396

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: K5706_RS03095
• Genome accession: NZ_AP019849
• Coordinates: 647123..650509 (-)
• Length: 1128 a.a.
• NCBI ID: WP_221070980.1
• Uniprot ID: -
• Organism: Vibrio alfacsensis strain 04Ya249
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 642123..655509

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5706_RS03080 (VA249_05260)	-	642333..643358 (-)	1026	WP_221068060.1	ABC transporter permease	-
K5706_RS03085 (VA249_05270)	-	643361..644347 (-)	987	WP_005425282.1	ABC transporter permease	-
K5706_RS03090 (VA249_05280)	-	644518..646200 (-)	1683	WP_221068059.1	ABC transporter substrate-binding protein	-
K5706_RS03095 (VA249_05290)	chiS	647123..650509 (-)	3387	WP_221070980.1	response regulator	Regulator
K5706_RS03100 (VA249_05300)	rsmC	650736..651761 (-)	1026	WP_211916032.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
K5706_RS03105 (VA249_05310)	-	651869..652954 (-)	1086	WP_221068057.1	AI-2E family transporter	-
K5706_RS03110 (VA249_05320)	hemL	653353..654648 (-)	1296	WP_128810258.1	glutamate-1-semialdehyde 2,1-aminomutase	-
K5706_RS03115 (VA249_05330)	erpA	654886..655227 (+)	342	WP_211916035.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127145.85 Da
• Isoelectric Point: 6.0546

>NTDB_id=74396 K5706_RS03095 WP_221070980.1 647123..650509(-) (chiS) [Vibrio alfacsensis strain 04Ya249]
MFKFYKKQKFKRLQSTLMTAFLALSITPLTITAIFFLQSHTKDLEEQSTSHLLSVRDTKQQQIIDYFAAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGQDIESARHNAQQRYIKGSGDQIKTSILPESSDYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDIDGNVTYSINKDDNYGTNLLSGPYKDTALGKTFKRLSEDVSARRKINEDYTPVVVSDFDLENGKQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLVADINRDSSINTLLVGSNHQPRTINTKQQDIQNSLEVVDKALAGQTNVGTYKNGAGEE
FIAAFAPIQTRGITWALVVQLPEKEAFYRVHQLEKLFVIAMLIAIVLVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTKRKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGAIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISANVIDEQVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDTS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLATEAEIEATESLAARGHFQIPEINMDSNNDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVSDGPDTLTLIEQEKPELLLLDIMMPGMSGYQVCSELRKTYDHAELPIIM
LTALNQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKAEMRHVENKLLESELRQRAQIEASLLETQGRLLEQLE
SAPEAIICLREDQRVRFANEAACKLFRRNLEQLRRSSADELIAPKYLTVKQPHYCGKVDIYVEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDKDQLQKLKELGGEFTRLADKALGSKKDKQELMREVLVDVMSHA
LDYWESATGETKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKDQSPERAHIEAQRD
KLQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=74396 K5706_RS03095 WP_221070980.1 647123..650509(-) (chiS) [Vibrio alfacsensis strain 04Ya249]
ATGTTTAAATTCTACAAAAAGCAGAAATTTAAGCGTCTACAAAGTACGCTAATGACCGCCTTTTTGGCTCTAAGTATTAC
GCCCCTGACGATCACGGCGATCTTCTTCCTGCAATCTCACACTAAAGATCTTGAAGAACAGAGCACATCGCACCTTCTTT
CAGTTCGTGATACCAAGCAGCAGCAAATCATCGATTACTTCGCAGCGCAAGAAACCGAAGTAATGGGCTTTGTGCGTTCA
GAATTAGCTTATGCCAGCGGTGGACGATTCTACGGTCTGGTTAATGCATTTAGTCGCTTGGGGCAAGATATCGAAAGCGC
AAGACACAACGCTCAACAGCGTTACATTAAAGGCAGTGGCGACCAAATCAAAACCTCGATTTTGCCTGAATCTTCAGATT
ACGTTGGCAGTGAACGCTATCGTCTGCTCCATAAGCGCTACCACTGGGCTTATCTAGAATTACTCAAGCGCTCAGATTTC
AACGATATTTTATTGGTCGACATTGATGGGAACGTCACGTATTCAATCAACAAAGACGACAACTATGGCACTAACTTACT
AAGCGGCCCATACAAAGATACCGCATTGGGTAAGACGTTTAAGCGCCTATCTGAAGATGTCAGTGCTCGCCGAAAAATCA
ATGAAGACTATACCCCCGTAGTCGTGTCTGACTTTGATTTAGAAAATGGAAAACAAGTCGCATGGCTTGGTGCACCTATT
GTACAACAAGGCTACCTACACAGTTATGCCATGTTCCGCCTACCAAATAATGGCATCACCAAGCTTGTTGCTGATATCAA
CCGTGATTCATCCATCAATACCCTTTTAGTTGGTAGCAACCATCAACCTCGAACCATTAACACCAAGCAACAAGATATTC
AAAACAGCTTGGAAGTCGTGGATAAAGCCCTTGCTGGTCAAACAAACGTTGGAACCTACAAAAATGGGGCGGGCGAAGAA
TTTATCGCCGCATTTGCGCCTATCCAAACCCGAGGAATCACTTGGGCATTGGTGGTTCAACTACCAGAAAAAGAAGCTTT
TTATCGCGTTCATCAGCTAGAAAAGCTATTCGTTATTGCAATGCTTATCGCTATTGTTCTAGTAGTCATTGCATCACATT
ACCTGTCTAACTTCATTACTTCTCCTCTACTCAAATTAACGTGGGCTGCTGAAAAGGTTTCCGCAGGTGATCTAGACGAA
ACCACATTTAATACCAAACGCAAGGATGAAATTGGCCGTCTAGCCATTAGTTTTGAGCGTATGCAACGTTCTATTCGCGA
GAAGATCCAAACCATCAAGCAACAAAACGAAGAGCTAGAGAGCAACATCAAGCTGATCCAAAAGCAAAACGAAGAGTTGC
AATTGGCAGACAAACTCAAAGATGAGTTCCTAGCAACGACGTCCCACGAATTACGTACGCCACTACACGGGATGGTAGGA
ATTGCAGAAACCCTAGTCTCGGGAGCAAATGGTGCCATTCCAGCAAGCCAAAAGTACCAACTGGATATCATCATTAAAAG
TGGTCAGCGCTTGGCAAACCTCGTAGATGATTTATTGGATTACCACAAAATGCGTTATGGCAGCATGGATATCCAAAAGT
CGGCGGTTAGCCTTGCGAGTGCTACTCGCTTGGTGCTTGAGCTTTCAAATCATTTACTTGGAAACAAAACCATCCGAATC
ATCAATCAAGTTCCAGCTGATTTAAAAGCCGTTTCAGCCGATCCTCAGCGCTTAGAGCAAGTGCTGTATAACTTGATCGG
CAATGCGATCAAGTACACCTCTGAGGGGAAAATCGTCATCTCGGCCAATGTCATTGATGAGCAAGTCCGAGTTCAAGTGG
TCGATACTGGCCAAGGTATTCCAGCTGAACACCTCGAGCATATTTTTGAACCGCTTATCCAGGCAGGACAAGATACCAGC
CGTTACCGTCAAGGTGCTGGTTTGGGGCTATCAATCAGCCGTCAATTGATTGAGTTAATGGGCGGGTCACTCTATGTGAG
CAGCCAGCCAATGGTCGGGACGACATTTAGTTTCACTCTGCCACTGGCTACGGAAGCAGAAATTGAAGCCACTGAAAGCC
TTGCTGCTCGAGGACATTTCCAAATTCCTGAAATTAACATGGACAGCAACAACGATCTTTCTCTACCAGAAAATCCTGAT
GGCCCTCTTCTTTATGTGGCCGACGATGAACCCGTTAACTTACGCGTGTTAGAAAGCTTCTTACGATTAGAAGGCTACCG
AGTACGTACCGTTTCTGATGGTCCTGATACACTAACGTTAATCGAACAGGAAAAGCCTGAACTCTTATTACTCGATATCA
TGATGCCGGGAATGAGCGGCTATCAAGTTTGTAGTGAATTGCGTAAAACATACGATCATGCTGAACTGCCAATCATTATG
CTCACTGCTCTGAATCAAACTGAAGACCGTGTTCGTGGATTTGAAGCCGGTGCCAATGATTACCTATCAAAGCCATTTAA
TAAACAAGAGCTTGCTGCTCGGATTCAGGCCCACCTAACGGCAAGTAAAGCAGAAATGCGTCATGTCGAGAATAAACTCC
TAGAGTCCGAACTCCGACAACGAGCACAGATTGAAGCAAGCTTACTAGAAACGCAAGGACGGTTACTTGAACAACTAGAA
TCCGCTCCTGAAGCCATCATTTGCTTGCGTGAAGACCAACGTGTGCGTTTTGCCAATGAAGCCGCATGTAAGCTGTTTAG
ACGAAATTTGGAGCAGCTCAGACGATCTTCGGCAGATGAGTTAATCGCGCCGAAATACCTAACAGTAAAGCAACCACATT
ACTGCGGTAAGGTCGATATATACGTTGAAGATATTCGTCAAAATATTGAAGCAGACATCCTTAAACTTCCTGAGGGTTCT
GGTCTAGACGTCATGTATATATTTAACGTCGGCGGTGGGGCAAATGCAGCGCGTATCCACAATTTGGAAACTGCCGTTGA
AGTACTGTCGAGCTATGCATTCGATGGCGACAAGGACCAACTTCAAAAATTGAAAGAGCTTGGTGGAGAATTTACTCGTC
TTGCAGATAAAGCATTGGGCAGTAAAAAGGACAAACAAGAGCTCATGCGTGAAGTACTCGTCGATGTTATGTCGCACGCC
CTTGATTATTGGGAATCCGCAACCGGAGAAACCAAATTCGCTTTTGCAGAACAAAGTGGTTTGTGGCGTGTCTATCTCGA
CCGAAGTACGCTACAAACTCGTACGCTCGATAAATATATGCGCATTGAAACGCTACCTAAAACGCCACGCTGGCGAACGG
TACTAAGCTCTATCGAATTCATTCTTGAGCATTGTAAGGACCAAAGTCCAGAGCGTGCTCATATAGAAGCCCAACGAGAC
AAGTTACAAAGATTGCTTACCAGTTAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• Response regulator receiver domain (Response_reg) (726-836)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.283	100	0.764