Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   K5706_RS02915 Genome accession   NZ_AP019849
Coordinates   599086..599700 (-) Length   204 a.a.
NCBI ID   WP_128810226.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain 04Ya249     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 594086..604700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5706_RS02905 (VA249_04900) aceF 595307..597232 (+) 1926 WP_221068082.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  K5706_RS02910 (VA249_04910) lpdA 597491..598921 (+) 1431 WP_211916006.1 dihydrolipoyl dehydrogenase -
  K5706_RS02915 (VA249_04920) opaR 599086..599700 (-) 615 WP_128810226.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  K5706_RS02920 (VA249_04930) hpt 600024..600554 (+) 531 WP_211916007.1 hypoxanthine phosphoribosyltransferase -
  K5706_RS02925 (VA249_04940) can 600633..601301 (-) 669 WP_221068081.1 carbonate dehydratase -
  K5706_RS02930 (VA249_04950) - 601576..603246 (+) 1671 WP_221068080.1 SulP family inorganic anion transporter -
  K5706_RS02935 (VA249_04960) - 603466..604383 (+) 918 WP_221069943.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23551.67 Da        Isoelectric Point: 6.0733

>NTDB_id=74395 K5706_RS02915 WP_128810226.1 599086..599700(-) (opaR) [Vibrio alfacsensis strain 04Ya249]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQYSNFLS
DNIDLDLHARENISNITNAMLELVSQDCHWQKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFNGICYSLFVQANRTSNDSELATLTASYLNMLCIYKHEH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=74395 K5706_RS02915 WP_128810226.1 599086..599700(-) (opaR) [Vibrio alfacsensis strain 04Ya249]
ATGGATTCAATCGCGAAGAGACCTCGCACTAGGCTTTCCCCACTAAAACGTAAACAGCAACTTATGGAAATTGCGTTAGA
AGTATTCGCACGCCGTGGCATTGGTCGCGGTGGCCATGCCGATATCGCAGATATCGCTCAAGTTTCTGTTGCAACAGTTT
TTAATTACTTCCCAACTCGCGAAGACTTGGTTGATGAAGTACTAAATCATGTTGTTCGTCAATACTCTAACTTCTTATCT
GACAATATCGATTTAGATCTGCATGCTCGCGAAAATATCTCAAATATTACCAACGCGATGCTTGAGTTAGTGAGTCAAGA
CTGTCATTGGCAGAAAGTATGGTTTGAATGGAGCGCATCGACGCGTGATGAGGTTTGGCCTCTATTTGTCTCTACAAATA
GAACGAACCAACTGTTAGTTCAAAACATGTTCATTAAAGCCATTGAGCGAGGTGAAGTCTGCGATCAGCATGAGCCAGAA
CACTTGGCAAACCTGTTCAATGGTATTTGTTACTCGTTGTTCGTCCAAGCCAATCGAACCAGTAATGATAGCGAACTGGC
GACGCTTACCGCCTCTTACCTAAATATGCTTTGTATTTATAAACATGAGCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

89.216

100

0.892
  hapR Vibrio cholerae C6706

72

98.039

0.706
  hapR Vibrio cholerae strain A1552

72

98.039

0.706

Multiple sequence alignment