Detailed information NTG0074387

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K5706_RS02650
• Genome accession: NZ_AP019849
• Coordinates: 548054..549040 (+)
• Length: 328 a.a.
• NCBI ID: WP_221070934.1
• Uniprot ID: -
• Organism: Vibrio alfacsensis strain 04Ya249
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 543054..554040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5706_RS02615 (VA249_04420)	ftsB	543062..543340 (+)	279	WP_128810181.1	cell division protein FtsB	-
K5706_RS02620 (VA249_04430)	ispD	543345..544052 (+)	708	WP_221070931.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K5706_RS02625 (VA249_04440)	ispF	544067..544543 (+)	477	WP_211915975.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K5706_RS02630 (VA249_04450)	truD	544590..545633 (+)	1044	WP_221068116.1	tRNA pseudouridine(13) synthase TruD	-
K5706_RS02635 (VA249_04460)	surE	545633..546409 (+)	777	WP_221070932.1	5'/3'-nucleotidase SurE	-
K5706_RS02640 (VA249_04470)	-	546409..547035 (+)	627	WP_221068114.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K5706_RS02645 (VA249_04480)	-	547050..547973 (+)	924	WP_221070933.1	peptidoglycan DD-metalloendopeptidase family protein	-
K5706_RS02650 (VA249_04490)	rpoS	548054..549040 (+)	987	WP_221070934.1	RNA polymerase sigma factor RpoS	Regulator
K5706_RS02655 (VA249_04500)	mutS	549131..551692 (-)	2562	WP_221068111.1	DNA mismatch repair protein MutS	-
K5706_RS02660 (VA249_04510)	pncC	551777..552259 (+)	483	WP_221068110.1	nicotinamide-nucleotide amidase	-
K5706_RS02665 (VA249_04520)	recA	552460..553503 (+)	1044	WP_221070935.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37446.54 Da
• Isoelectric Point: 4.8368

>NTDB_id=74387 K5706_RS02650 WP_221070934.1 548054..549040(+) (rpoS) [Vibrio alfacsensis strain 04Ya249]
MSISNTVTKVEEFGYDKTAVQSTASELEKTPSKETKTVVREELDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVSNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=74387 K5706_RS02650 WP_221070934.1 548054..549040(+) (rpoS) [Vibrio alfacsensis strain 04Ya249]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGGTTATGACAAAACGGCAGTGCAAAGCACAGCAAGCGAACT
TGAAAAAACTCCGTCTAAAGAAACTAAAACGGTTGTACGCGAAGAGCTTGACGCGAGCAACAAAAGCCTAGATGCCACAC
AGCTGTATCTTGGCGAGATAGGTTTCTCTCCGCTACTTACTGCAGAAGAAGAAGTACTCTATGCTCGTCGCGCGCTTCGA
GGCGATGAAGCTGCGCGCAAACGAATGATCGAGAGTAACTTGCGTCTTGTGGTTAAAATTTCTCGTCGATATAGCAATCG
TGGTTTAGCGCTGCTCGATCTTATTGAAGAAGGTAATCTTGGTTTGATCCGTGCGGTAGAGAAGTTTGACCCAGAGCGCG
GGTTTCGTTTTTCTACTTATGCGACATGGTGGATCCGTCAAACTATCGAACGCGCATTGATGAACCAAACTCGCACGATT
CGCCTACCAATTCATGTTGTGAAAGAGCTAAACATTTATCTGCGCACCGCGCGCGAACTCTCTCAAAAGCTCGATCATGA
ACCAACGGCAGAAGAAATTGCCGCACAGTTGGATATCCCTGTTGAAGATGTCAGTAAGATGCTGCGTCTGAACGAACGTA
TTAGTTCGGTTGATACACCGATTGGTGGGGATGGAGAAAAGGCTCTCCTCGACATTATCCCAGATGTAAGCAACTCTGAT
CCGGAAGTATCAACGCAAGATGATGACATTAAGTCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCACGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTTTAACGC
GTGAGCGTGTTCGTCAGATACAAGTTGAAGGTTTGCGTCGATTGCGCGAGATTTTGATCAAACAAGGTCTGAATATGGAA
AACCTATTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.857