Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QDX08_RS09785 Genome accession   NZ_CP122904
Coordinates   2000095..2000751 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain ETEC1706     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1995095..2005751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDX08_RS09755 (QDX08_09755) dcyD 1995974..1996960 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  QDX08_RS09760 (QDX08_09760) tcyL 1996975..1997643 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QDX08_RS09765 (QDX08_09765) tcyN 1997640..1998392 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QDX08_RS09770 (QDX08_09770) sdiA 1998622..1999344 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  QDX08_RS09775 (QDX08_09775) yecF 1999412..1999636 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QDX08_RS09780 (QDX08_09780) yecU 1999623..1999799 (-) 177 WP_000590344.1 protein YecU -
  QDX08_RS31275 - 1999837..1999953 (-) 117 WP_001302039.1 hypothetical protein -
  QDX08_RS09785 (QDX08_09785) letA 2000095..2000751 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QDX08_RS09790 (QDX08_09790) uvrC 2000748..2002580 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QDX08_RS09795 (QDX08_09795) pgsA 2002637..2003185 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QDX08_RS09815 (QDX08_09815) yecA 2003835..2004500 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=743849 QDX08_RS09785 WP_000611335.1 2000095..2000751(+) (letA) [Escherichia coli strain ETEC1706]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=743849 QDX08_RS09785 WP_000611335.1 2000095..2000751(+) (letA) [Escherichia coli strain ETEC1706]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486