Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QDX06_RS09915 Genome accession   NZ_CP122872
Coordinates   2031511..2032167 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain ETEC1718     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2026511..2037167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDX06_RS09885 (QDX06_09885) dcyD 2027391..2028377 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  QDX06_RS09890 (QDX06_09890) tcyL 2028392..2029060 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QDX06_RS09895 (QDX06_09895) tcyN 2029057..2029809 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QDX06_RS09900 (QDX06_09900) sdiA 2030039..2030761 (+) 723 WP_224727654.1 transcriptional regulator SdiA -
  QDX06_RS09905 (QDX06_09905) yecF 2030829..2031053 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QDX06_RS09910 (QDX06_09910) yecU 2031040..2031215 (-) 176 Protein_1937 protein YecU -
  QDX06_RS26465 - 2031253..2031369 (-) 117 WP_001302039.1 hypothetical protein -
  QDX06_RS09915 (QDX06_09915) letA 2031511..2032167 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QDX06_RS09920 (QDX06_09920) uvrC 2032164..2033996 (+) 1833 WP_032187456.1 excinuclease ABC subunit UvrC Machinery gene
  QDX06_RS09925 (QDX06_09925) pgsA 2034053..2034601 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QDX06_RS09945 (QDX06_09945) - 2035297..2035623 (-) 327 Protein_1942 hypothetical protein -
  QDX06_RS09950 (QDX06_09950) istA 2035704..2036726 (+) 1023 WP_160371803.1 IS21-like element IS100 family transposase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=743601 QDX06_RS09915 WP_000611335.1 2031511..2032167(+) (letA) [Escherichia coli strain ETEC1718]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=743601 QDX06_RS09915 WP_000611335.1 2031511..2032167(+) (letA) [Escherichia coli strain ETEC1718]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486