Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QDY31_RS09365 Genome accession   NZ_CP122859
Coordinates   1922147..1922803 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain ETEC1720     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1917147..1927803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY31_RS09335 (QDY31_09335) dcyD 1918027..1919013 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  QDY31_RS09340 (QDY31_09340) tcyL 1919028..1919696 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QDY31_RS09345 (QDY31_09345) tcyN 1919693..1920445 (+) 753 WP_001272991.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QDY31_RS09350 (QDY31_09350) sdiA 1920675..1921397 (+) 723 WP_001152713.1 transcriptional regulator SdiA -
  QDY31_RS09355 (QDY31_09355) yecF 1921464..1921688 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QDY31_RS09360 (QDY31_09360) yecU 1921675..1921851 (-) 177 WP_000590347.1 protein YecU -
  QDY31_RS26130 - 1921934..1922005 (-) 72 Protein_1830 transcriptional regulator -
  QDY31_RS09365 (QDY31_09365) letA 1922147..1922803 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QDY31_RS09370 (QDY31_09370) uvrC 1922800..1924632 (+) 1833 WP_001283412.1 excinuclease ABC subunit UvrC Machinery gene
  QDY31_RS09375 (QDY31_09375) pgsA 1924689..1925237 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QDY31_RS09395 (QDY31_09395) - 1925931..1926671 (-) 741 WP_106661694.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=743432 QDY31_RS09365 WP_000611335.1 1922147..1922803(+) (letA) [Escherichia coli strain ETEC1720]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=743432 QDY31_RS09365 WP_000611335.1 1922147..1922803(+) (letA) [Escherichia coli strain ETEC1720]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486