Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QDX00_RS09330 Genome accession   NZ_CP122844
Coordinates   1919142..1919798 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain ETEC1722     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1914142..1924798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDX00_RS09300 (QDX00_09300) dcyD 1915022..1916008 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  QDX00_RS09305 (QDX00_09305) tcyL 1916023..1916691 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QDX00_RS09310 (QDX00_09310) tcyN 1916688..1917440 (+) 753 WP_001272991.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QDX00_RS09315 (QDX00_09315) sdiA 1917670..1918392 (+) 723 WP_001152713.1 transcriptional regulator SdiA -
  QDX00_RS09320 (QDX00_09320) yecF 1918459..1918683 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QDX00_RS09325 (QDX00_09325) yecU 1918670..1918846 (-) 177 WP_000590347.1 protein YecU -
  QDX00_RS25560 - 1918929..1919000 (-) 72 Protein_1823 transcriptional regulator -
  QDX00_RS09330 (QDX00_09330) letA 1919142..1919798 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QDX00_RS09335 (QDX00_09335) uvrC 1919795..1921627 (+) 1833 WP_001283412.1 excinuclease ABC subunit UvrC Machinery gene
  QDX00_RS09340 (QDX00_09340) pgsA 1921684..1922232 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QDX00_RS09360 (QDX00_09360) - 1922926..1923666 (-) 741 WP_106661694.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=743347 QDX00_RS09330 WP_000611335.1 1919142..1919798(+) (letA) [Escherichia coli strain ETEC1722]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=743347 QDX00_RS09330 WP_000611335.1 1919142..1919798(+) (letA) [Escherichia coli strain ETEC1722]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486