Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QDY29_RS10275 Genome accession   NZ_CP122816
Coordinates   2094623..2095279 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain ETEC1731     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2089623..2100279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY29_RS10245 (QDY29_10245) dcyD 2090502..2091488 (+) 987 WP_001128209.1 D-cysteine desulfhydrase -
  QDY29_RS10250 (QDY29_10250) tcyL 2091503..2092171 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QDY29_RS10255 (QDY29_10255) tcyN 2092168..2092920 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QDY29_RS10260 (QDY29_10260) sdiA 2093150..2093872 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  QDY29_RS10265 (QDY29_10265) yecF 2093940..2094164 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QDY29_RS10270 (QDY29_10270) yecU 2094151..2094327 (-) 177 WP_000590344.1 protein YecU -
  QDY29_RS26840 - 2094365..2094481 (-) 117 WP_001302039.1 hypothetical protein -
  QDY29_RS10275 (QDY29_10275) letA 2094623..2095279 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QDY29_RS10280 (QDY29_10280) uvrC 2095276..2097108 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QDY29_RS10285 (QDY29_10285) pgsA 2097165..2097713 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QDY29_RS10305 (QDY29_10305) - 2098409..2099149 (-) 741 WP_000413227.1 hypothetical protein -
  QDY29_RS10310 (QDY29_10310) - 2099230..2100255 (+) 1026 Protein_2015 site-specific integrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=743096 QDY29_RS10275 WP_000611335.1 2094623..2095279(+) (letA) [Escherichia coli strain ETEC1731]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=743096 QDY29_RS10275 WP_000611335.1 2094623..2095279(+) (letA) [Escherichia coli strain ETEC1731]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486