Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QDY55_RS10530 Genome accession   NZ_CP122768
Coordinates   2155108..2155764 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain ETEC1738     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2150108..2160764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY55_RS10500 (QDY55_10495) dcyD 2150988..2151974 (+) 987 WP_064226342.1 D-cysteine desulfhydrase -
  QDY55_RS10505 (QDY55_10500) tcyL 2151989..2152657 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QDY55_RS10510 (QDY55_10505) tcyN 2152654..2153406 (+) 753 WP_001272991.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QDY55_RS10515 (QDY55_10510) sdiA 2153636..2154358 (+) 723 WP_001154271.1 transcriptional regulator SdiA -
  QDY55_RS10520 (QDY55_10515) yecF 2154425..2154649 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QDY55_RS10525 (QDY55_10520) yecU 2154636..2154812 (-) 177 WP_000590347.1 protein YecU -
  QDY55_RS10530 (QDY55_10525) letA 2155108..2155764 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QDY55_RS10535 (QDY55_10530) uvrC 2155761..2157593 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QDY55_RS10540 (QDY55_10535) pgsA 2157650..2158198 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QDY55_RS10560 (QDY55_10555) - 2158783..2159799 (-) 1017 WP_021560873.1 tyrosine-type recombinase/integrase -
  QDY55_RS10565 (QDY55_10560) - 2159768..2160031 (-) 264 WP_064226341.1 DUF4224 domain-containing protein -
  QDY55_RS10575 (QDY55_10570) - 2160241..2160423 (-) 183 WP_000916333.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=742927 QDY55_RS10530 WP_000611328.1 2155108..2155764(+) (letA) [Escherichia coli strain ETEC1738]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=742927 QDY55_RS10530 WP_000611328.1 2155108..2155764(+) (letA) [Escherichia coli strain ETEC1738]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482