Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QDY55_RS06630 Genome accession   NZ_CP122768
Coordinates   1343909..1344646 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ETEC1738     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338909..1349646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY55_RS06605 (QDY55_06600) tyrA 1339283..1340404 (+) 1122 WP_000225210.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QDY55_RS06610 (QDY55_06605) pheA 1340447..1341607 (-) 1161 WP_064226296.1 bifunctional chorismate mutase/prephenate dehydratase -
  QDY55_RS06615 (QDY55_06610) pheL 1341706..1341753 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QDY55_RS06620 (QDY55_06615) raiA 1341857..1342198 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QDY55_RS06625 (QDY55_06620) - 1342468..1343805 (-) 1338 WP_024168519.1 IS4-like element IS4 family transposase -
  QDY55_RS06630 (QDY55_06625) comL 1343909..1344646 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QDY55_RS06635 (QDY55_06630) rluD 1344781..1345761 (+) 981 WP_000079097.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QDY55_RS06640 (QDY55_06635) yfiH 1345758..1346489 (+) 732 WP_000040154.1 purine nucleoside phosphorylase YfiH -
  QDY55_RS06645 (QDY55_06640) clpC 1346619..1349192 (+) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=742914 QDY55_RS06630 WP_000197686.1 1343909..1344646(-) (comL) [Escherichia coli strain ETEC1738]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=742914 QDY55_RS06630 WP_000197686.1 1343909..1344646(-) (comL) [Escherichia coli strain ETEC1738]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCGACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376