Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QDW92_RS10285 Genome accession   NZ_CP122719
Coordinates   2107880..2108536 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain ETEC1748     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2102880..2113536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW92_RS10255 (QDW92_10255) dcyD 2103761..2104747 (+) 987 WP_063086320.1 D-cysteine desulfhydrase -
  QDW92_RS10260 (QDW92_10260) tcyL 2104762..2105430 (+) 669 WP_192297623.1 cystine ABC transporter permease -
  QDW92_RS10265 (QDW92_10265) tcyN 2105427..2106179 (+) 753 WP_001272991.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QDW92_RS10270 (QDW92_10270) sdiA 2106408..2107130 (+) 723 WP_001154271.1 transcriptional regulator SdiA -
  QDW92_RS10275 (QDW92_10275) yecF 2107197..2107421 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QDW92_RS10280 (QDW92_10280) yecU 2107408..2107584 (-) 177 WP_000590347.1 protein YecU -
  QDW92_RS10285 (QDW92_10285) letA 2107880..2108536 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QDW92_RS10290 (QDW92_10290) uvrC 2108533..2110365 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QDW92_RS10295 (QDW92_10295) pgsA 2110422..2110970 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QDW92_RS10315 (QDW92_10315) yecA 2111620..2112285 (+) 666 WP_000847882.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=742597 QDW92_RS10285 WP_000611328.1 2107880..2108536(+) (letA) [Escherichia coli strain ETEC1748]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=742597 QDW92_RS10285 WP_000611328.1 2107880..2108536(+) (letA) [Escherichia coli strain ETEC1748]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482