Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QDX02_RS06695 Genome accession   NZ_CP122712
Coordinates   1339150..1339887 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ETEC1749     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1334150..1344887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDX02_RS06660 (QDX02_06660) - 1334263..1334403 (+) 141 WP_000078920.1 Hok/Gef family protein -
  QDX02_RS06665 (QDX02_06665) - 1334539..1334835 (+) 297 WP_001519189.1 TM2 domain-containing protein -
  QDX02_RS06670 (QDX02_06670) - 1335025..1335222 (+) 198 WP_001353016.1 Com family DNA-binding transcriptional regulator -
  QDX02_RS06675 (QDX02_06675) - 1335167..1335958 (+) 792 WP_001535163.1 site-specific DNA-methyltransferase -
  QDX02_RS06680 (QDX02_06680) - 1336370..1337839 (+) 1470 WP_032167339.1 AAA family ATPase -
  QDX02_RS06685 (QDX02_06685) - 1338087..1338386 (+) 300 Protein_1312 site-specific DNA-methyltransferase -
  QDX02_RS06690 (QDX02_06690) raiA 1338538..1338879 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QDX02_RS06695 (QDX02_06695) comL 1339150..1339887 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QDX02_RS06700 (QDX02_06700) rluD 1340022..1341002 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QDX02_RS06705 (QDX02_06705) yfiH 1340999..1341729 (+) 731 Protein_1316 purine nucleoside phosphorylase YfiH -
  QDX02_RS06710 (QDX02_06710) clpC 1341859..1344432 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=742503 QDX02_RS06695 WP_000197686.1 1339150..1339887(-) (comL) [Escherichia coli strain ETEC1749]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=742503 QDX02_RS06695 WP_000197686.1 1339150..1339887(-) (comL) [Escherichia coli strain ETEC1749]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376