Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QDW56_RS05970 Genome accession   NZ_CP122673
Coordinates   1231584..1232321 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ETEC4071     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1226584..1237321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW56_RS05940 (QDW56_05940) yfiL 1226742..1227107 (-) 366 WP_001353010.1 DUF2799 domain-containing protein -
  QDW56_RS05945 (QDW56_05945) aroF 1227317..1228387 (+) 1071 WP_063085133.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QDW56_RS05950 (QDW56_05950) tyrA 1228398..1229519 (+) 1122 WP_063118558.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QDW56_RS05955 (QDW56_05955) pheA 1229562..1230722 (-) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  QDW56_RS05960 (QDW56_05960) pheL 1230821..1230868 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QDW56_RS05965 (QDW56_05965) raiA 1230972..1231313 (-) 342 WP_063085007.1 ribosome-associated translation inhibitor RaiA -
  QDW56_RS05970 (QDW56_05970) comL 1231584..1232321 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QDW56_RS05975 (QDW56_05975) rluD 1232456..1233436 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QDW56_RS05980 (QDW56_05980) yfiH 1233433..1234164 (+) 732 WP_001520329.1 purine nucleoside phosphorylase YfiH -
  QDW56_RS05985 (QDW56_05985) clpC 1234294..1236867 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=742092 QDW56_RS05970 WP_000197686.1 1231584..1232321(-) (comL) [Escherichia coli strain ETEC4071]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=742092 QDW56_RS05970 WP_000197686.1 1231584..1232321(-) (comL) [Escherichia coli strain ETEC4071]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376