Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QDY56_RS06320 Genome accession   NZ_CP122648
Coordinates   1285224..1285961 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ETEC4077     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1280224..1290961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY56_RS06295 (QDY56_06295) - 1282750..1282890 (+) 141 WP_000078920.1 Hok/Gef family protein -
  QDY56_RS06300 (QDY56_06300) - 1283026..1283322 (+) 297 WP_001519189.1 TM2 domain-containing protein -
  QDY56_RS06305 (QDY56_06305) - 1283512..1283709 (+) 198 WP_001353016.1 Com family DNA-binding transcriptional regulator -
  QDY56_RS06310 (QDY56_06310) - 1283654..1284460 (+) 807 WP_032084989.1 site-specific DNA-methyltransferase -
  QDY56_RS06315 (QDY56_06315) raiA 1284612..1284953 (-) 342 WP_063085007.1 ribosome-associated translation inhibitor RaiA -
  QDY56_RS06320 (QDY56_06320) comL 1285224..1285961 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QDY56_RS06325 (QDY56_06325) rluD 1286096..1287076 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QDY56_RS06330 (QDY56_06330) yfiH 1287073..1287804 (+) 732 WP_001520329.1 purine nucleoside phosphorylase YfiH -
  QDY56_RS06335 (QDY56_06335) clpC 1287934..1290507 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=741845 QDY56_RS06320 WP_000197686.1 1285224..1285961(-) (comL) [Escherichia coli strain ETEC4077]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=741845 QDY56_RS06320 WP_000197686.1 1285224..1285961(-) (comL) [Escherichia coli strain ETEC4077]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376