Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   TthHC11_RS10400 Genome accession   NZ_AP019801
Coordinates   1904265..1904573 (+) Length   102 a.a.
NCBI ID   WP_024119555.1    Uniprot ID   -
Organism   Thermus thermophilus strain HC11     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1899265..1909573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthHC11_RS10370 (TthHC11_20180) - 1900346..1900810 (+) 465 WP_011229049.1 hypothetical protein -
  TthHC11_RS10375 (TthHC11_20190) pfkA 1900787..1901755 (-) 969 WP_011173968.1 6-phosphofructokinase -
  TthHC11_RS10380 (TthHC11_20200) rsmI 1901752..1902546 (-) 795 WP_143591817.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  TthHC11_RS10385 (TthHC11_20210) - 1902548..1903042 (-) 495 WP_011173970.1 hypothetical protein -
  TthHC11_RS10390 (TthHC11_20220) - 1903106..1903633 (-) 528 WP_011173971.1 inorganic diphosphatase -
  TthHC11_RS10395 (TthHC11_20230) - 1903666..1904292 (+) 627 WP_143591818.1 YcxB family protein -
  TthHC11_RS10400 (TthHC11_20240) comEA 1904265..1904573 (+) 309 WP_024119555.1 helix-hairpin-helix domain-containing protein Machinery gene
  TthHC11_RS10405 (TthHC11_20250) comA/comEC 1904570..1906603 (+) 2034 WP_143591819.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  TthHC11_RS10410 (TthHC11_20260) - 1906591..1907400 (-) 810 WP_011229053.1 ParB/RepB/Spo0J family partition protein -
  TthHC11_RS10415 (TthHC11_20270) soj 1907384..1908133 (-) 750 WP_143591820.1 chromosome-partitioning ATPase Soj -
  TthHC11_RS10420 (TthHC11_20280) rsmG 1908127..1908876 (-) 750 WP_143591821.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10947.23 Da        Isoelectric Point: 10.3435

>NTDB_id=74180 TthHC11_RS10400 WP_024119555.1 1904265..1904573(+) (comEA) [Thermus thermophilus strain HC11]
MVLGYLLAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP

Nucleotide


Download         Length: 309 bp        

>NTDB_id=74180 TthHC11_RS10400 WP_024119555.1 1904265..1904573(+) (comEA) [Thermus thermophilus strain HC11]
CTGGTCCTCGGCTACCTCCTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAGGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTGGCCCGGCGCATCGTGGAGGGCAGGCCCTACGCCCGGGTGGAG
GACCTTCTCAAGGTGAAGGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Thermus thermophilus HB27

100

100

1
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.815

100

0.422

Multiple sequence alignment