Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OIO62_RS01700 Genome accession   NZ_CP107616
Coordinates   356797..357615 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 1326932     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351797..362615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO62_RS01665 (OIO62_01665) - 352379..352509 (-) 131 Protein_318 hypothetical protein -
  OIO62_RS01670 (OIO62_01670) rpoZ 352548..352826 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OIO62_RS01675 (OIO62_01675) gmk 352899..353528 (-) 630 WP_000015937.1 guanylate kinase -
  OIO62_RS01680 (OIO62_01680) ispH 353651..354601 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OIO62_RS01685 (OIO62_01685) fimU 354771..355244 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OIO62_RS01690 (OIO62_01690) pilV 355238..355798 (+) 561 WP_086300325.1 type IV pilus modification protein PilV Machinery gene
  OIO62_RS01695 (OIO62_01695) pilW 355799..356800 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  OIO62_RS01700 (OIO62_01700) pilX 356797..357615 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OIO62_RS01705 (OIO62_01705) pilY1 357627..361481 (+) 3855 WP_000768947.1 PilC/PilY family type IV pilus protein Machinery gene
  OIO62_RS01710 (OIO62_01710) pilY2 361494..361976 (+) 483 WP_001046414.1 type IV pilin protein Machinery gene
  OIO62_RS01715 (OIO62_01715) pilE 361973..362398 (+) 426 WP_000788335.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=741534 OIO62_RS01700 WP_000149374.1 356797..357615(+) (pilX) [Acinetobacter baumannii strain 1326932]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=741534 OIO62_RS01700 WP_000149374.1 356797..357615(+) (pilX) [Acinetobacter baumannii strain 1326932]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993