Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   VroAM7_RS18805 Genome accession   NZ_AP019799
Coordinates   474108..476153 (-) Length   681 a.a.
NCBI ID   WP_143693538.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain AM7     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 469108..481153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VroAM7_RS18785 (VroAM7_34710) - 469390..470370 (-) 981 WP_088880057.1 chemotaxis protein -
  VroAM7_RS18790 (VroAM7_34720) - 470622..471347 (-) 726 WP_138954607.1 nitroreductase family protein -
  VroAM7_RS18795 (VroAM7_34730) ylqF 471639..472583 (+) 945 WP_045384898.1 ribosome biogenesis GTPase YlqF -
  VroAM7_RS18800 (VroAM7_34740) cqsA 472880..474061 (+) 1182 WP_143693537.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VroAM7_RS18805 (VroAM7_34750) cqsS 474108..476153 (-) 2046 WP_143693538.1 response regulator Regulator
  VroAM7_RS18810 (VroAM7_34760) - 476400..476948 (-) 549 WP_010452170.1 GNAT family N-acetyltransferase -
  VroAM7_RS18815 (VroAM7_34770) - 477240..478364 (+) 1125 WP_143693539.1 acyl-CoA desaturase -
  VroAM7_RS18820 (VroAM7_34780) dcuC 478740..480107 (+) 1368 WP_010452174.1 anaerobic C4-dicarboxylate transporter DcuC -
  VroAM7_RS18825 (VroAM7_34790) - 480336..480926 (+) 591 WP_172622590.1 LemA family protein -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78347.27 Da        Isoelectric Point: 5.6086

>NTDB_id=74152 VroAM7_RS18805 WP_143693538.1 474108..476153(-) (cqsS) [Vibrio rotiferianus strain AM7]
MNALRKVYQYAEPNLTLVGWMGFVGFPAYFIVWEYLFPQPYENLPLRLFCSLLFLGIIVRNKLSSRLKANMHWYYQFAIT
LCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHITRVMFIQTFVGVFLATFFAWASKGFHLHITMDWTHVPIFLFIY
LFGNLFYFRNQVEHEAKVSIAKSFGAGIAHEMRNPLSGLCSSIDVMQSIIPDPKQEKKDTYQLSIEDIELLREISDDAMK
MIQSGNETIDLLLTSIDENRVSRATFKKHNVQQVIENAIESFSYKRASDRAAISIDIRSSFGFLGSDTLLKYVVYNLFKN
AFHHRSSEDFHIHVTVESNNNANRIVVTDNGAGISVDALENIFRDFYTTGKSGNYGLGLPFCKKVMRSFGGDIKCVSELG
EWSQFTLTFPLLNSPVVEEIKDELIKLKSVLLISNQKILVSKATDLSRHMGFQFDVINTLDVFNKKEYEFEYDVIFVDLE
SIDIRGTQLDRIESLLSFTEGQIVYLFQQHSPSRPIKAGYFPIWMETQAWLLNTYTTIERLLFDVDYESAAAPIREIEHD
NRRTIMVVDDNESLRKFTALLLEKQGFDVIQREDGEQALEALSSESIDLILMDIEMPVMDGIETSRKIRSSKCAYSTIPI
IAHTGDSSPVTLEKIESSGMSDFIVKPADKARLFDKIAHWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=74152 VroAM7_RS18805 WP_143693538.1 474108..476153(-) (cqsS) [Vibrio rotiferianus strain AM7]
ATGAATGCATTGCGTAAGGTATACCAGTATGCAGAGCCGAATCTGACGTTAGTTGGTTGGATGGGGTTTGTTGGCTTTCC
GGCGTACTTTATTGTATGGGAGTACTTGTTCCCACAGCCATACGAAAACTTACCGCTGCGCTTGTTTTGCTCACTTCTAT
TTCTCGGGATTATCGTTAGAAACAAATTAAGCTCTCGCCTAAAAGCAAACATGCATTGGTACTATCAGTTTGCTATAACC
CTTTGCTTACCATTTTTCTTTTTCTATATGTTGCTGATGAATGATTGGTCCAATGTTTGGGTTATGTCATTTATGTCGGC
GATTTTTTTGCATATCCTTTTGGTCCATATCACTCGAGTGATGTTTATCCAAACGTTCGTTGGGGTTTTTCTGGCTACGT
TTTTTGCGTGGGCCTCGAAAGGGTTTCACCTGCATATAACGATGGATTGGACACATGTTCCGATCTTTTTGTTTATCTAT
CTTTTCGGCAATCTATTTTATTTTAGAAACCAAGTTGAACATGAAGCAAAAGTATCAATAGCTAAGTCATTTGGAGCGGG
GATTGCTCACGAAATGCGTAACCCGTTAAGCGGGCTTTGCTCTTCCATCGATGTGATGCAGTCAATTATTCCAGACCCAA
AACAAGAGAAAAAAGACACTTATCAACTGTCCATTGAAGATATTGAGTTATTGCGCGAGATTAGCGATGACGCAATGAAA
ATGATTCAGTCAGGTAATGAGACTATCGATTTGTTGCTGACATCAATAGATGAGAATAGAGTTTCTCGCGCTACCTTTAA
AAAGCATAATGTCCAACAAGTGATTGAAAATGCAATTGAAAGTTTCAGCTACAAGCGAGCGTCAGATAGGGCTGCAATAT
CAATCGATATCCGGAGTAGCTTTGGCTTTTTAGGTAGTGACACTTTGTTAAAGTACGTAGTTTACAACCTATTTAAAAAT
GCATTTCATCATCGCAGTTCAGAAGACTTCCATATTCACGTGACCGTTGAGTCGAACAATAATGCCAACCGTATTGTTGT
TACTGATAATGGGGCTGGGATCTCGGTTGATGCTCTTGAAAACATTTTTAGGGACTTCTATACAACCGGTAAATCTGGAA
ATTATGGGCTTGGCTTGCCATTTTGTAAGAAGGTCATGCGCTCCTTCGGTGGTGATATTAAATGTGTCTCTGAGCTTGGA
GAGTGGTCTCAATTTACGCTGACATTTCCTCTTCTTAATTCGCCAGTAGTAGAAGAAATAAAGGATGAGTTAATCAAGTT
GAAATCAGTACTGTTGATATCTAACCAAAAGATCCTGGTGAGTAAGGCGACAGACTTAAGTCGTCATATGGGGTTTCAGT
TTGATGTTATTAATACGTTGGATGTCTTCAATAAGAAAGAGTACGAGTTCGAGTATGACGTGATTTTTGTCGACCTTGAA
AGTATTGATATCCGAGGAACACAGCTGGATAGAATTGAATCACTTCTATCATTTACAGAAGGGCAAATCGTTTACTTATT
CCAGCAGCATTCACCATCTCGTCCAATTAAGGCTGGCTATTTCCCTATCTGGATGGAGACTCAAGCTTGGTTACTAAACA
CTTACACGACTATCGAACGGTTATTGTTTGATGTTGATTATGAGTCTGCTGCGGCCCCTATTAGAGAAATAGAGCACGAT
AACAGAAGGACTATCATGGTCGTTGACGATAACGAATCGCTACGAAAGTTCACCGCGTTGTTGTTAGAAAAGCAGGGGTT
TGATGTTATTCAGAGAGAAGATGGCGAACAAGCACTGGAAGCTTTGAGTTCTGAAAGTATTGATTTAATTTTAATGGATA
TTGAAATGCCAGTGATGGATGGGATTGAAACATCGCGCAAGATTCGTAGTTCGAAGTGTGCTTACTCGACGATTCCAATT
ATTGCACATACAGGTGATAGCTCACCGGTGACACTTGAAAAGATAGAGTCATCAGGTATGTCTGATTTTATCGTCAAGCC
AGCTGATAAAGCTCGATTGTTTGACAAAATTGCTCATTGGATATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(565-677)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.759

100

0.49

Multiple sequence alignment