Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   VroAM7_RS18800 Genome accession   NZ_AP019799
Coordinates   472880..474061 (+) Length   393 a.a.
NCBI ID   WP_143693537.1    Uniprot ID   A0A510IBL3
Organism   Vibrio rotiferianus strain AM7     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 467880..479061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VroAM7_RS18785 (VroAM7_34710) - 469390..470370 (-) 981 WP_088880057.1 chemotaxis protein -
  VroAM7_RS18790 (VroAM7_34720) - 470622..471347 (-) 726 WP_138954607.1 nitroreductase family protein -
  VroAM7_RS18795 (VroAM7_34730) ylqF 471639..472583 (+) 945 WP_045384898.1 ribosome biogenesis GTPase YlqF -
  VroAM7_RS18800 (VroAM7_34740) cqsA 472880..474061 (+) 1182 WP_143693537.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VroAM7_RS18805 (VroAM7_34750) cqsS 474108..476153 (-) 2046 WP_143693538.1 response regulator Regulator
  VroAM7_RS18810 (VroAM7_34760) - 476400..476948 (-) 549 WP_010452170.1 GNAT family N-acetyltransferase -
  VroAM7_RS18815 (VroAM7_34770) - 477240..478364 (+) 1125 WP_143693539.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43391.50 Da        Isoelectric Point: 6.3147

>NTDB_id=74151 VroAM7_RS18800 WP_143693537.1 472880..474061(+) (cqsA) [Vibrio rotiferianus strain AM7]
MSDKAKIKPLPSFVEERLDFYIHDLIAKNQNKKHLVLGKRPTDSSVVMQSNDYLSLSSNRQIQADHQHAISEDDDNVVMS
AIFLQDEQSKPKFEQQLADFTGMESCLLSQSGWAANVGLLQTICAPQTPVYIDFFAHMSLWEGARIAGAEIHPFMHNNMN
HLQKQIKRHGEGIIIVDSIYSTIGTIAPLETIYEIASESNCALIVDESHSLGTHGPAGAGLVKALGLTSKVDFITVSLAK
TFAYRAGAILGPKKLSQSLPFVAYPAIFSSTILPQEVVRLESTLNVIKSADDKRKALFARSSSLRTGLKQIGFQIRSESQ
IIALECGSEENTEKVRDFLEEHDVFGAVFCRPATGKNKNIIRFSINADITTAQVEHVLAVCEKAFNNPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=74151 VroAM7_RS18800 WP_143693537.1 472880..474061(+) (cqsA) [Vibrio rotiferianus strain AM7]
ATGAGTGACAAAGCTAAAATAAAACCACTTCCTTCCTTTGTTGAGGAGCGTCTGGACTTTTACATCCATGATTTAATAGC
AAAAAATCAAAACAAAAAACACCTTGTACTAGGAAAACGCCCAACGGATAGTTCAGTGGTGATGCAAAGTAACGACTACC
TATCCTTGTCAAGCAACCGACAGATTCAAGCTGACCACCAGCACGCTATATCAGAAGATGATGATAACGTCGTAATGTCG
GCGATTTTTTTACAAGATGAACAATCTAAGCCTAAATTTGAACAGCAACTTGCTGATTTTACGGGAATGGAAAGTTGTTT
ATTGTCCCAATCAGGTTGGGCTGCAAATGTTGGCTTATTACAAACGATATGTGCACCACAAACTCCTGTCTATATCGACT
TCTTCGCCCACATGTCATTGTGGGAGGGAGCTCGTATCGCTGGAGCTGAAATTCACCCGTTCATGCACAACAACATGAAC
CACCTTCAAAAGCAAATCAAGCGACACGGTGAGGGCATTATTATCGTTGATTCTATTTACAGCACTATTGGAACCATAGC
GCCCCTCGAAACAATCTACGAAATTGCTTCTGAATCAAACTGCGCTCTTATCGTCGATGAGTCACATTCATTAGGTACAC
ATGGCCCTGCAGGAGCCGGGCTGGTAAAAGCACTTGGTTTAACGAGTAAAGTAGATTTTATTACGGTTAGCTTAGCCAAA
ACATTTGCTTATCGGGCAGGCGCAATCTTGGGCCCGAAAAAGCTATCTCAATCGCTCCCGTTTGTTGCGTATCCTGCTAT
TTTTAGCTCGACAATTCTTCCTCAAGAAGTTGTCCGCTTGGAATCTACGCTGAACGTTATTAAAAGTGCGGATGACAAAC
GAAAAGCTTTGTTTGCACGTTCATCATCTTTAAGAACCGGACTAAAGCAGATTGGATTTCAGATTCGTAGTGAATCACAG
ATCATTGCTTTAGAATGTGGAAGCGAAGAGAACACGGAAAAAGTGAGGGACTTTCTAGAGGAGCATGATGTATTTGGAGC
CGTTTTCTGTCGACCAGCTACAGGAAAAAACAAGAATATCATTCGTTTTTCTATCAACGCTGATATCACAACAGCTCAAG
TCGAACACGTATTGGCCGTGTGCGAAAAGGCTTTCAATAACCCTGAACTAGAATTTGTCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(48-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A510IBL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.29

98.219

0.573

Multiple sequence alignment