Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BsBEST3145_RS05010 Genome accession   NZ_AP024625
Coordinates   975633..976280 (+) Length   215 a.a.
NCBI ID   WP_014479290.1    Uniprot ID   -
Organism   Bacillus subtilis strain BEST3109     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 970633..981280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BsBEST3145_RS04995 (BsBEST3109_09190) glpD 970804..972471 (+) 1668 WP_014479287.1 glycerol-3-phosphate dehydrogenase -
  BsBEST3145_RS05000 (BsBEST3109_09200) pgcA 972603..974348 (+) 1746 WP_014479288.1 phosphoglucomutase -
  BsBEST3145_RS05005 (BsBEST3109_09210) yhcY 974497..975636 (+) 1140 WP_014479289.1 two-component system sensor histidine kinase YhcY -
  BsBEST3145_RS05010 (BsBEST3109_09220) vraR 975633..976280 (+) 648 WP_014479290.1 two-component system response regulator YhcZ Regulator
  BsBEST3145_RS05015 (BsBEST3109_09230) yhdA 976277..976801 (+) 525 WP_014479291.1 FMN-dependent NADPH-azoreductase -
  BsBEST3145_RS05020 (BsBEST3109_09240) yhdB 976816..977058 (-) 243 WP_003233373.1 YhdB family protein -
  BsBEST3145_RS05025 (BsBEST3109_09250) yhdC 977259..977582 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  BsBEST3145_RS05030 (BsBEST3109_09260) lytF 977624..979090 (-) 1467 WP_221251757.1 peptidoglycan endopeptidase -
  BsBEST3145_RS05035 (BsBEST3109_09270) nsrR 979243..979683 (-) 441 WP_003245378.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24135.75 Da        Isoelectric Point: 6.3034

>NTDB_id=74143 BsBEST3145_RS05010 WP_014479290.1 975633..976280(+) (vraR) [Bacillus subtilis strain BEST3109]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=74143 BsBEST3145_RS05010 WP_014479290.1 975633..976280(+) (vraR) [Bacillus subtilis strain BEST3109]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACCGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.409

Multiple sequence alignment