Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   VroAM7_RS14730 Genome accession   NZ_AP019798
Coordinates   3129773..3130360 (-) Length   195 a.a.
NCBI ID   WP_143693018.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain AM7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3124773..3135360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VroAM7_RS14705 (VroAM7_27400) aroB 3125075..3126175 (-) 1101 WP_010443901.1 3-dehydroquinate synthase -
  VroAM7_RS14710 (VroAM7_27410) aroK 3126207..3126725 (-) 519 WP_010443904.1 shikimate kinase AroK -
  VroAM7_RS14715 (VroAM7_27420) pilQ 3126914..3128647 (-) 1734 WP_143693016.1 type IV pilus secretin PilQ Machinery gene
  VroAM7_RS14720 (VroAM7_27430) pilP 3128685..3129197 (-) 513 WP_088880304.1 pilus assembly protein PilP Machinery gene
  VroAM7_RS14725 (VroAM7_27440) pilO 3129187..3129780 (-) 594 WP_143693017.1 type 4a pilus biogenesis protein PilO Machinery gene
  VroAM7_RS14730 (VroAM7_27450) pilN 3129773..3130360 (-) 588 WP_143693018.1 PilN domain-containing protein Machinery gene
  VroAM7_RS14735 (VroAM7_27460) pilM 3130344..3131360 (-) 1017 WP_138941723.1 type IV pilus assembly protein PilM Machinery gene
  VroAM7_RS14740 (VroAM7_27470) - 3131501..3134068 (+) 2568 WP_088880300.1 penicillin-binding protein 1A -
  VroAM7_RS14745 (VroAM7_27480) oxyR 3134146..3135054 (-) 909 WP_143693019.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22742.33 Da        Isoelectric Point: 7.4643

>NTDB_id=74143 VroAM7_RS14730 WP_143693018.1 3129773..3130360(-) (pilN) [Vibrio rotiferianus strain AM7]
MLQPVNLLPWREQKREVHRRRFLVLILFALVATFSVQMGIKQYFSYQQQQQQDRLDYLELYIADLDKRIEEMKIAEQEHS
KILTRLKEVEGLQLGRNKTTEFMSLLPNTIPSGVYVDKIKMDDLSVEISGISDSTSRLATMLDRMEKSSELMDVEMHSIV
HGKARFGKEFQTFRVSFLLKPSEHLTVGLGGKQYE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=74143 VroAM7_RS14730 WP_143693018.1 3129773..3130360(-) (pilN) [Vibrio rotiferianus strain AM7]
ATGCTTCAACCCGTTAATTTACTCCCTTGGAGAGAACAGAAAAGAGAGGTCCACCGTCGTCGGTTCTTGGTTTTGATTCT
ATTTGCTTTGGTAGCCACATTCAGTGTGCAGATGGGAATTAAGCAGTACTTTTCTTATCAGCAACAACAGCAACAAGACC
GATTGGATTATCTTGAGCTTTACATTGCTGATTTAGACAAGCGTATTGAGGAAATGAAAATTGCTGAGCAGGAGCACAGC
AAAATTCTTACACGTCTAAAAGAGGTGGAAGGTTTACAACTGGGAAGGAATAAAACGACGGAGTTTATGAGCTTGTTACC
TAATACCATTCCGTCGGGGGTTTATGTCGACAAAATTAAAATGGATGACCTTTCGGTAGAGATAAGTGGGATAAGCGATA
GCACCTCACGGTTAGCAACCATGCTTGACAGAATGGAAAAATCCTCAGAATTGATGGATGTGGAAATGCATTCCATTGTT
CATGGCAAAGCTCGCTTTGGAAAGGAATTTCAAACTTTCAGAGTCTCGTTTCTGTTAAAGCCAAGTGAGCATTTGACTGT
GGGTTTGGGTGGTAAGCAATATGAGTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

69.072

99.487

0.687
  pilN Vibrio cholerae strain A1552

55.026

96.923

0.533

Multiple sequence alignment