Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   OIO76_RS17480 Genome accession   NZ_CP107608
Coordinates   3623985..3624725 (-) Length   246 a.a.
NCBI ID   WP_000076106.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326924-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3618985..3629725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO76_RS17460 (OIO76_17465) aroB 3619527..3620609 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  OIO76_RS17465 (OIO76_17470) aroK 3620638..3621207 (-) 570 WP_000643712.1 shikimate kinase AroK -
  OIO76_RS17470 (OIO76_17475) - 3621219..3623384 (-) 2166 Protein_3413 type IV pilus secretin PilQ -
  OIO76_RS17475 (OIO76_17480) pilP 3623447..3623974 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OIO76_RS17480 (OIO76_17485) pilO 3623985..3624725 (-) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  OIO76_RS17485 (OIO76_17490) pilN 3624722..3625363 (-) 642 WP_031961396.1 PilN domain-containing protein Machinery gene
  OIO76_RS17490 (OIO76_17495) pilM 3625363..3626421 (-) 1059 WP_031961398.1 pilus assembly protein PilM Machinery gene
  OIO76_RS17495 (OIO76_17500) ponA 3626583..3629138 (+) 2556 WP_031965088.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27805.56 Da        Isoelectric Point: 4.8357

>NTDB_id=741404 OIO76_RS17480 WP_000076106.1 3623985..3624725(-) (pilO) [Acinetobacter baumannii strain 1326924-2]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWVFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=741404 OIO76_RS17480 WP_000076106.1 3623985..3624725(-) (pilO) [Acinetobacter baumannii strain 1326924-2]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGGTTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679