Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   VroAM7_RS13200 Genome accession   NZ_AP019798
Coordinates   2821230..2824616 (+) Length   1128 a.a.
NCBI ID   WP_010450108.1    Uniprot ID   A0A2K7SNE8
Organism   Vibrio rotiferianus strain AM7     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2816230..2829616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VroAM7_RS13180 (VroAM7_24810) erpA 2816574..2816915 (-) 342 WP_005449174.1 iron-sulfur cluster insertion protein ErpA -
  VroAM7_RS13185 (VroAM7_24820) hemL 2817162..2818457 (+) 1296 WP_143692941.1 glutamate-1-semialdehyde 2,1-aminomutase -
  VroAM7_RS27545 - 2818553..2818681 (-) 129 WP_010450103.1 hypothetical protein -
  VroAM7_RS13190 (VroAM7_24830) - 2818817..2819902 (+) 1086 WP_143692942.1 AI-2E family transporter -
  VroAM7_RS13195 (VroAM7_24840) rsmC 2819979..2821001 (+) 1023 WP_143692943.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  VroAM7_RS13200 (VroAM7_24850) chiS 2821230..2824616 (+) 3387 WP_010450108.1 response regulator Regulator
  VroAM7_RS13205 (VroAM7_24860) - 2825462..2827144 (+) 1683 WP_010450110.1 ABC transporter substrate-binding protein -
  VroAM7_RS13210 (VroAM7_24870) - 2827316..2828302 (+) 987 WP_038884262.1 ABC transporter permease -
  VroAM7_RS13215 (VroAM7_24880) - 2828305..2829330 (+) 1026 WP_143692944.1 ABC transporter permease -

Sequence

Protein


Download         Length: 1128 a.a.        Molecular weight: 127301.00 Da        Isoelectric Point: 5.7766

>NTDB_id=74125 VroAM7_RS13200 WP_010450108.1 2821230..2824616(+) (chiS) [Vibrio rotiferianus strain AM7]
MFKFYKKQKFKRLQNTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQILDYFAAQETEVMGFVRS
ELAYASGGRFYGLVNAFNRLGQSEEESRENAQQRYIKGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDIDGNVTYSINKDDNYGTNLLTGRYKDAALGRTFKRLSEDVSARRKVNEDYTPVVISDFDVENGKQVAWLGAPI
IQQGYLHSYAMFRLPSNGITKLIAEINRDTPIETLLVGSDHKPRTINTKSNEINNSLIVVDKALQGETSVETYTNGVGED
IMAAFAPISNRGITWALVVQLPEKLAFARVHQLEKLFVIAMFIAIILVIIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNAELESNIKLIQKQNEDLQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGVIPASQKYQLDIIIKSGQRLASLVDDLLDYHKMRYGSMDIQKSAVNLPSATQLVLELSSHLLGNKTIRI
INQVPSDLVPVSADPQRLEQVLYNLIGNAIKYTSEGKIVISAGVIDDHIRVQVVDTGQGIPAEQLEHIFEPLIQAGQDST
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPVASEDEISLTQNLSVRGHFQVPENGVEVNEEPSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVTDGPETLELVEKEKPELLLLDIMMPGMSGYQVCSELRKHYDHAELPVIM
LTALNQTEDRVRGFEAGANDYLSKPFNKHELAARIQAHLTASKAEQRRIENKQLESELKQRAQVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLRRSSADELIAPKYLTVKQPHYCGKIDIYVEDVRQNIEADILKLPEGS
GLDVMYIFNVGGGASATRIYNLETAVEVLSSYAFDGDKDQLQKLKELGGEFTRLADKALGNKKDKQDLMREILVDTMIHA
LDYWESATGESKFAFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLSSIEFILEHCKEQSPDRSHIEAQRD
KLQRLLTS

Nucleotide


Download         Length: 3387 bp        

>NTDB_id=74125 VroAM7_RS13200 WP_010450108.1 2821230..2824616(+) (chiS) [Vibrio rotiferianus strain AM7]
ATGTTTAAGTTTTACAAAAAGCAGAAATTTAAGCGACTGCAGAATACTCTCATGACCGCATTTCTGGTCTTAAGTATTAC
GCCTTTGACGATCACTGCGATTTTCTTCCTACAATCACACAGTAAAGATTTACAAGAACAGAGTACATCTCATCTTCTCT
CTGTCCGTGATACTAAGCAGCAGCAAATCTTAGATTATTTTGCAGCCCAAGAAACCGAAGTCATGGGCTTTGTTCGTTCT
GAGCTCGCATACGCGAGCGGCGGACGCTTCTATGGTCTCGTGAATGCATTTAATCGCTTGGGTCAAAGTGAAGAAGAATC
TCGTGAAAATGCACAGCAACGCTACATAAAAGGTAGTGGTGATCAGATAAAAACGTCGATTTTACCCGAATCTTCCAATT
ACGTAGGTAGTGAGCGTTATCGACTACTACATAAACGTTATCACTGGGCATACCTAGAGCTGCTTAAACGCTCTGACTTC
AACGACATTCTATTGGTCGATATTGACGGCAACGTGACGTATTCAATCAACAAAGATGACAACTACGGTACCAACCTACT
AACAGGACGCTATAAAGATGCGGCTTTAGGCAGAACATTCAAGCGCCTATCTGAAGATGTAAGTGCTCGCCGTAAAGTCA
ATGAAGACTATACGCCAGTTGTTATTTCAGACTTTGACGTAGAAAACGGTAAACAAGTTGCTTGGCTTGGCGCTCCAATT
ATCCAACAAGGCTACCTACACAGCTATGCAATGTTCCGCCTACCGAGTAACGGGATCACCAAATTAATAGCGGAGATCAA
CCGTGACACACCTATCGAAACTCTTTTAGTTGGGTCTGATCATAAACCAAGGACAATCAACACCAAAAGTAACGAAATAA
ACAATAGCTTAATTGTGGTTGATAAGGCGCTACAAGGTGAAACGAGCGTAGAAACCTACACCAATGGAGTGGGTGAAGAT
ATCATGGCTGCATTTGCGCCAATCAGCAATCGAGGGATTACTTGGGCGCTAGTTGTTCAATTGCCAGAAAAACTCGCCTT
TGCTCGCGTGCATCAATTAGAAAAGTTGTTTGTTATCGCGATGTTTATCGCCATTATTCTAGTGATTATTGCATCGCACT
ACCTATCTAACTTCATCACTTCCCCTTTACTTAAGCTGACTTGGGCAGCAGAGAAAGTATCCGCTGGTGATCTAGATGAA
ACGACTTTTAATACTGAACGAAAAGACGAAATCGGTCGCCTCGCAATCAGCTTCGAACGAATGCAGCGCTCTATCCGCGA
AAAAATCCAGACGATTAAACAACAAAATGCAGAACTAGAGAGCAACATTAAACTCATTCAAAAGCAAAATGAGGATTTGC
AGCTCGCTGATAAGCTCAAAGATGAATTCCTTGCCACCACTTCTCACGAGTTAAGAACACCATTACATGGGATGGTTGGC
ATTGCCGAGACATTAGTTTCTGGCGCGAATGGAGTCATTCCCGCGAGCCAGAAATACCAGCTCGATATCATTATTAAAAG
TGGCCAACGACTCGCCAGCCTAGTTGACGACCTACTTGATTACCATAAGATGCGCTACGGCAGTATGGATATTCAAAAAT
CTGCCGTTAACTTACCAAGTGCAACGCAACTGGTTCTTGAGCTGTCTAGCCACTTGTTAGGCAACAAAACGATTCGGATT
ATCAATCAAGTTCCTAGTGATCTTGTTCCAGTATCGGCCGACCCTCAGCGCTTAGAACAAGTTCTCTATAACCTTATTGG
CAATGCGATTAAGTACACATCTGAAGGTAAAATTGTTATTTCAGCAGGTGTGATAGACGATCACATCCGAGTGCAAGTTG
TAGATACAGGACAAGGGATACCAGCGGAGCAATTAGAGCACATCTTTGAACCTCTGATTCAAGCAGGCCAAGACTCCACC
CGATACCGCCAAGGTGCTGGGCTCGGCCTATCGATCAGCCGTCAATTGATTGAACTGATGGGCGGCTCTCTCTACGTAAG
TAGCCAACCGATGGTTGGTACTACATTTAGTTTCACGCTACCTGTAGCAAGTGAAGATGAGATATCTCTGACTCAAAACC
TTTCAGTTCGTGGCCATTTCCAGGTGCCAGAAAACGGAGTCGAAGTAAATGAGGAGCCTTCACTTCCAGAGAACCCGGAC
GGTCCACTACTGTATGTTGCTGATGATGAGCCTGTAAACCTACGTGTGCTAGAAAGCTTCTTACGCCTTGAAGGCTACCG
AGTAAGAACGGTAACCGATGGTCCAGAAACACTAGAACTTGTTGAGAAAGAAAAACCTGAGCTGTTATTGCTTGATATCA
TGATGCCTGGAATGAGTGGCTACCAAGTTTGTAGCGAACTACGTAAACACTACGATCATGCCGAGCTTCCCGTCATTATG
CTCACTGCACTCAATCAAACTGAAGATCGTGTTCGAGGATTTGAAGCTGGCGCGAATGACTATTTATCCAAGCCATTCAA
TAAGCATGAACTAGCAGCAAGGATTCAAGCACATTTAACCGCAAGTAAGGCAGAGCAACGTCGAATCGAGAATAAGCAGC
TTGAGAGTGAACTAAAGCAACGCGCTCAAGTAGAAGCTAGCTTGCTAGAAACTCAAGGGCGACTTTTAGAGCAACTAGAG
TCCGCTCCTGAAGCGATCATATGTTTACGGGAAGACCAACGAATTCGATTTGCGAATGAGGCTGCCTGCAAACTGTTTAA
GCGCAGCCTAGAACAGTTGCGACGCTCATCTGCAGATGAGCTTATTGCCCCTAAGTATTTGACCGTTAAACAGCCTCATT
ACTGCGGAAAAATTGATATTTATGTTGAAGATGTTCGCCAAAATATTGAAGCGGATATCCTCAAGCTTCCTGAAGGTTCC
GGCCTCGACGTCATGTATATCTTTAACGTTGGAGGGGGGGCAAGCGCGACTCGAATTTACAATCTGGAAACAGCTGTAGA
AGTATTGTCTAGCTATGCATTTGACGGTGATAAAGACCAACTACAAAAGCTGAAGGAACTGGGTGGCGAGTTTACACGCC
TAGCTGATAAAGCTCTGGGTAACAAGAAGGATAAGCAGGATCTAATGCGGGAAATACTGGTTGATACCATGATTCATGCC
CTAGATTACTGGGAGTCTGCTACCGGAGAGAGTAAATTTGCTTTTGCGGAACAAAGCGGCCTTTGGCGAGTGTACTTAGA
CAGAAGCACCCTCCAAACACGAACCTTAGATAAATACCTACGTATCGAGACGCTACCTAAGACACCTCGTTGGCGAACTG
TACTAAGCTCTATAGAGTTTATTCTTGAGCATTGTAAAGAACAAAGCCCCGATCGTAGCCACATTGAAGCACAGCGCGAT
AAACTGCAGAGGTTACTCACTAGCTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(460-525)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(574-682)

HAMP domain (HAMP)

(375-427)

Response regulator receiver domain (Response_reg)

(726-836)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K7SNE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

76.439

100

0.765

Multiple sequence alignment