Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VroAM7_RS10840 Genome accession   NZ_AP019798
Coordinates   2308266..2309627 (-) Length   453 a.a.
NCBI ID   WP_143693251.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain AM7     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2303266..2314627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VroAM7_RS10805 (VroAM7_20130) moaE 2303866..2304321 (-) 456 WP_010449369.1 molybdopterin synthase catalytic subunit MoaE -
  VroAM7_RS10810 (VroAM7_20140) moaD 2304323..2304580 (-) 258 WP_010449371.1 molybdopterin synthase sulfur carrier subunit -
  VroAM7_RS10815 (VroAM7_20150) moaC 2304580..2305056 (-) 477 WP_005439664.1 cyclic pyranopterin monophosphate synthase MoaC -
  VroAM7_RS10820 (VroAM7_20160) moaB 2305083..2305595 (-) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  VroAM7_RS10825 (VroAM7_20170) moaA 2305696..2306685 (-) 990 WP_038885128.1 GTP 3',8-cyclase MoaA -
  VroAM7_RS10830 (VroAM7_20180) yvcK 2306988..2307878 (+) 891 WP_010449378.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  VroAM7_RS10835 (VroAM7_20190) luxU 2307925..2308269 (-) 345 WP_010449380.1 quorum-sensing phosphorelay protein LuxU -
  VroAM7_RS10840 (VroAM7_20200) luxO 2308266..2309627 (-) 1362 WP_143693251.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VroAM7_RS10845 (VroAM7_20210) uvrB 2310023..2312053 (-) 2031 WP_143692740.1 excinuclease ABC subunit UvrB -
  VroAM7_RS10855 (VroAM7_20220) rsxA 2313033..2313611 (+) 579 WP_005425202.1 electron transport complex subunit RsxA -
  VroAM7_RS10860 (VroAM7_20230) rsxB 2313615..2314208 (+) 594 WP_005439677.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50310.39 Da        Isoelectric Point: 5.1393

>NTDB_id=74124 VroAM7_RS10840 WP_143693251.1 2308266..2309627(-) (luxO) [Vibrio rotiferianus strain AM7]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKESNPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLG
YMSHEEGKSFVRFSPEVIERFNDYEWPGNVRQLQNVLRNIVVLNSGKEISLDMLPPPLNAPMTKIPMPRAVEIESFSASD
IIPLWMTEKSAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNQTEEQKKA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=74124 VroAM7_RS10840 WP_143693251.1 2308266..2309627(-) (luxO) [Vibrio rotiferianus strain AM7]
ATGGTCGAAGACACCGCATCCGTCGCAGCGTTATATCGCTCCTATCTAACACCTCTTGGTATTGATATTAATATCGTTGG
CACTGGGCGTGATGCTATTGACAGCTTAAAGCACCGAATCCCAGATTTAATTCTGCTGGATCTGCGTCTACCCGATATGA
CAGGTATGGATGTTCTCCATGCGGTTAAAGAGAGTAACCCAGACGTCCCGATCATTTTTATGACGGCACACGGCTCTATT
GATACGGCCGTAGAGGCAATGCGTCATGGTTCCCAAGATTTTTTAATTAAGCCCTGCGAAGCCGACCGATTGCGTGTCAC
GGTGAATAATGCGATCCGCAAAGCAACCAAATTAAAGAATGAAGCTGACAACCCTGGCAATCAAAATTATCAAGGCTTTA
TTGGCAGTAGCCAAACCATGCAGCAGGTTTACCGCACCATTGACTCTGCTGCGAGCAGTAAGGCGAGCATTTTCATTACT
GGTGAAAGTGGCACGGGTAAAGAAGTGTGTGCGGAGGCGATTCACGCAGCAAGTAAGCGTGGAGATAAGCCGTTTATCGC
CATCAACTGTGCAGCAATTCCGAAAGACCTTATTGAAAGTGAACTGTTTGGTCACGTAAAAGGTGCTTTCACCGGTGCGG
CTAATGATCGACAAGGTGCGGCAGAACTGGCTGATGGCGGCACGCTGTTCCTTGATGAGCTGTGTGAAATGGACTTGGAT
CTTCAAACTAAGTTATTGCGTTTTATTCAAACGGGTACGTTCCAAAAGGTCGGTTCTTCTAAAATGAAGAGCGTAGACGT
GCGCTTTGTGTGTGCGACCAACCGCGACCCATGGAAAGAGGTTCAAGAAGGCCGTTTCCGTGAAGACCTTTACTATCGTT
TGTACGTAATTCCATTACACCTCCCACCACTACGTGAACGTGGTGAAGATGTAATTGAAATTGCTTATTCACTGCTTGGC
TACATGTCGCATGAAGAAGGGAAGAGCTTTGTACGTTTCTCTCCAGAGGTAATAGAGCGATTCAATGATTACGAATGGCC
TGGAAACGTTCGCCAATTGCAAAACGTGTTACGTAACATTGTTGTCTTGAACAGCGGTAAAGAGATTTCTTTAGACATGT
TACCGCCACCATTGAACGCGCCAATGACTAAGATACCAATGCCAAGAGCCGTTGAAATCGAGAGTTTTTCCGCTTCTGAT
ATTATACCGTTGTGGATGACAGAGAAGTCCGCCATTGAACAGGCTATAGAGGCTTGCGATGGCAATATACCGAGAGCTGC
TGGGTATTTGGATGTAAGCCCTTCAACGATTTATCGTAAGCTCCAAACTTGGAATCAAACCGAAGAGCAGAAAAAGGCAT
GA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.723

98.896

0.868
  pilR Pseudomonas aeruginosa PAK

37.303

98.234

0.366

Multiple sequence alignment