Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OIO39_RS17430 Genome accession   NZ_CP107587
Coordinates   3601612..3602430 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 1326527-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3596612..3607430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO39_RS17415 (OIO39_17410) pilE 3596829..3597254 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  OIO39_RS17420 (OIO39_17415) pilY2 3597251..3597733 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  OIO39_RS17425 (OIO39_17420) pilY1 3597746..3601600 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  OIO39_RS17430 (OIO39_17425) pilX 3601612..3602430 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OIO39_RS17435 (OIO39_17430) pilW 3602427..3603428 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  OIO39_RS17440 (OIO39_17435) pilV 3603429..3603989 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  OIO39_RS17445 (OIO39_17440) fimU 3603983..3604456 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OIO39_RS17450 (OIO39_17445) ispH 3604626..3605576 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OIO39_RS17455 (OIO39_17450) gmk 3605699..3606328 (+) 630 WP_000015937.1 guanylate kinase -
  OIO39_RS17460 (OIO39_17455) rpoZ 3606401..3606679 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OIO39_RS17465 (OIO39_17460) - 3606718..3606847 (+) 130 Protein_3413 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=741015 OIO39_RS17430 WP_000149374.1 3601612..3602430(-) (pilX) [Acinetobacter baumannii strain 1326527-2]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=741015 OIO39_RS17430 WP_000149374.1 3601612..3602430(-) (pilX) [Acinetobacter baumannii strain 1326527-2]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993