Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   OIO39_RS17445 Genome accession   NZ_CP107587
Coordinates   3603983..3604456 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain 1326527-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3598983..3609456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO39_RS17430 (OIO39_17425) pilX 3601612..3602430 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OIO39_RS17435 (OIO39_17430) pilW 3602427..3603428 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  OIO39_RS17440 (OIO39_17435) pilV 3603429..3603989 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  OIO39_RS17445 (OIO39_17440) fimU 3603983..3604456 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OIO39_RS17450 (OIO39_17445) ispH 3604626..3605576 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OIO39_RS17455 (OIO39_17450) gmk 3605699..3606328 (+) 630 WP_000015937.1 guanylate kinase -
  OIO39_RS17460 (OIO39_17455) rpoZ 3606401..3606679 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OIO39_RS17465 (OIO39_17460) - 3606718..3606847 (+) 130 Protein_3413 hypothetical protein -
  OIO39_RS17470 (OIO39_17465) - 3606887..3608992 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=741018 OIO39_RS17445 WP_001214061.1 3603983..3604456(-) (fimU) [Acinetobacter baumannii strain 1326527-2]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=741018 OIO39_RS17445 WP_001214061.1 3603983..3604456(-) (fimU) [Acinetobacter baumannii strain 1326527-2]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987