Detailed information NTG0740890

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: OIO86_RS09090
• Genome accession: NZ_CP107581
• Coordinates: 1862764..1863465 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594580.1
• Uniprot ID: A0A836YMN8
• Organism: Acinetobacter baumannii strain 1326525-2
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1857764..1868465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OIO86_RS09055 (OIO86_09060)	kdsB	1858287..1859048 (+)	762	WP_000680701.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
OIO86_RS09060 (OIO86_09065)	-	1859060..1860040 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
OIO86_RS09065 (OIO86_09070)	-	1860052..1860393 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
OIO86_RS09070 (OIO86_09075)	-	1860411..1861184 (+)	774	WP_000497298.1	TatD family hydrolase	-
OIO86_RS09075 (OIO86_09080)	-	1861222..1861830 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
OIO86_RS09080 (OIO86_09085)	-	1861840..1862394 (+)	555	WP_000841367.1	type II secretion system protein	-
OIO86_RS09085 (OIO86_09090)	xcpV	1862384..1862764 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
OIO86_RS09090 (OIO86_09095)	xcpW	1862764..1863465 (+)	702	WP_000594580.1	type II secretion system minor pseudopilin GspJ	Machinery gene
OIO86_RS09095 (OIO86_09100)	gspK	1863465..1864424 (+)	960	WP_031960447.1	type II secretion system minor pseudopilin GspK	-
OIO86_RS09100 (OIO86_09105)	-	1864654..1865250 (+)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
OIO86_RS09105 (OIO86_09110)	ung	1865301..1866014 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
OIO86_RS09110 (OIO86_09115)	-	1866011..1867135 (+)	1125	WP_109067466.1	enoyl-CoA hydratase/isomerase family protein	-
OIO86_RS09115 (OIO86_09120)	tadA	1867142..1867645 (+)	504	WP_031960449.1	tRNA adenosine(34) deaminase TadA	-
OIO86_RS09120 (OIO86_09125)	-	1867715..1868158 (+)	444	WP_031960450.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26673.64 Da
• Isoelectric Point: 9.5501

>NTDB_id=740890 OIO86_RS09090 WP_000594580.1 1862764..1863465(+) (xcpW) [Acinetobacter baumannii strain 1326525-2]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=740890 OIO86_RS09090 WP_000594580.1 1862764..1863465(+) (xcpW) [Acinetobacter baumannii strain 1326525-2]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAAATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A836YMN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987