Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QC806_RS09165 Genome accession   NZ_CP122507
Coordinates   1893814..1894470 (+) Length   218 a.a.
NCBI ID   WP_023281297.1    Uniprot ID   -
Organism   Escherichia coli strain W444     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1888814..1899470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC806_RS09135 dcyD 1889694..1890680 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  QC806_RS09140 tcyL 1890695..1891363 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QC806_RS09145 tcyN 1891360..1892112 (+) 753 WP_122056923.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QC806_RS09150 sdiA 1892342..1893064 (+) 723 WP_001154267.1 transcriptional regulator SdiA -
  QC806_RS09155 yecF 1893131..1893355 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QC806_RS09160 yecU 1893342..1893518 (-) 177 WP_001307856.1 protein YecU -
  QC806_RS09165 letA 1893814..1894470 (+) 657 WP_023281297.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QC806_RS09170 uvrC 1894467..1896299 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QC806_RS09175 pgsA 1896356..1896904 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QC806_RS09195 - 1897612..1898355 (-) 744 WP_042201988.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23936.71 Da        Isoelectric Point: 6.9614

>NTDB_id=740890 QC806_RS09165 WP_023281297.1 1893814..1894470(+) (letA) [Escherichia coli strain W444]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEVSCGEDAVKWCRTNSVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=740890 QC806_RS09165 WP_023281297.1 1893814..1894470(+) (letA) [Escherichia coli strain W444]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGTATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATTCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGCCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486