Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QC808_RS06215 Genome accession   NZ_CP122503
Coordinates   1254330..1255067 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain W619     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1249330..1260067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC808_RS06185 yfiL 1249488..1249853 (-) 366 WP_001301878.1 DUF2799 domain-containing protein -
  QC808_RS06190 aroF 1250063..1251133 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QC808_RS06195 tyrA 1251144..1252265 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QC808_RS06200 pheA 1252308..1253468 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  QC808_RS06205 pheL 1253567..1253614 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QC808_RS06210 raiA 1253718..1254059 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QC808_RS06215 comL 1254330..1255067 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QC808_RS06220 rluD 1255202..1256182 (+) 981 WP_000079091.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QC808_RS06225 yfiH 1256179..1256910 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  QC808_RS06230 clpC 1257040..1259613 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=740797 QC808_RS06215 WP_000197686.1 1254330..1255067(-) (comL) [Escherichia coli strain W619]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=740797 QC808_RS06215 WP_000197686.1 1254330..1255067(-) (comL) [Escherichia coli strain W619]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGAGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376