Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QC805_RS05570 Genome accession   NZ_CP122496
Coordinates   1134041..1134778 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain a7     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1129041..1139778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC805_RS05540 yfiL 1129199..1129564 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  QC805_RS05545 aroF 1129774..1130844 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QC805_RS05550 tyrA 1130855..1131976 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QC805_RS05555 pheA 1132019..1133179 (-) 1161 WP_284614061.1 bifunctional chorismate mutase/prephenate dehydratase -
  QC805_RS05560 pheL 1133278..1133325 (-) 48 WP_010723158.1 phe operon leader peptide -
  QC805_RS05565 raiA 1133429..1133770 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QC805_RS05570 comL 1134041..1134778 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QC805_RS05575 rluD 1134913..1135893 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QC805_RS05580 yfiH 1135890..1136621 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  QC805_RS05585 clpC 1136751..1139324 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=740638 QC805_RS05570 WP_000197686.1 1134041..1134778(-) (comL) [Escherichia coli strain a7]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=740638 QC805_RS05570 WP_000197686.1 1134041..1134778(-) (comL) [Escherichia coli strain a7]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCACCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376