Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OEG79_RS13820 Genome accession   NZ_CP107549
Coordinates   2901236..2901868 (-) Length   210 a.a.
NCBI ID   WP_264145562.1    Uniprot ID   -
Organism   Pseudomonas sp. Z8(2022)     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2896236..2906868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG79_RS13790 (OEG79_13790) murB 2897356..2898375 (-) 1020 WP_264145557.1 UDP-N-acetylmuramate dehydrogenase -
  OEG79_RS13795 (OEG79_13795) - 2898372..2898836 (-) 465 WP_264145558.1 low molecular weight protein-tyrosine-phosphatase -
  OEG79_RS13800 (OEG79_13800) kdsB 2898836..2899600 (-) 765 WP_264145559.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OEG79_RS13805 (OEG79_13805) - 2899601..2899786 (-) 186 WP_013714804.1 Trm112 family protein -
  OEG79_RS13810 (OEG79_13810) lpxK 2899809..2900810 (-) 1002 WP_264145560.1 tetraacyldisaccharide 4'-kinase -
  OEG79_RS13815 (OEG79_13815) - 2900811..2901239 (-) 429 WP_264145561.1 ExbD/TolR family protein -
  OEG79_RS13820 (OEG79_13820) exbB 2901236..2901868 (-) 633 WP_264145562.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OEG79_RS13825 (OEG79_13825) comA 2901941..2904154 (-) 2214 WP_264148722.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OEG79_RS13830 (OEG79_13830) - 2904291..2904818 (+) 528 WP_264145563.1 DUF2062 domain-containing protein -
  OEG79_RS13835 (OEG79_13835) - 2904856..2906100 (-) 1245 WP_264145564.1 lipoprotein-releasing ABC transporter permease subunit -
  OEG79_RS13840 (OEG79_13840) lolD 2906100..2906786 (-) 687 WP_264148723.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22821.07 Da        Isoelectric Point: 7.8833

>NTDB_id=740582 OEG79_RS13820 WP_264145562.1 2901236..2901868(-) (exbB) [Pseudomonas sp. Z8(2022)]
MWELVKAGGWIMLPIILCSIAAAGIVAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELREDSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGAGMANAPMLAGGISKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=740582 OEG79_RS13820 WP_264145562.1 2901236..2901868(-) (exbB) [Pseudomonas sp. Z8(2022)]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATAATGCTGCCGATCATTCTCTGTTCCATCGCTGCTGCCGGTATCGTTGC
CGAGCGTCTTTGGACCCTGCGGCCCGCCCGCGTCACCCCGGCCAATCTGCTGGCCCAGGTGTGGCGCTGGATCAAGGACA
AGAAACTCAACAACCAGAAGCTCAAGGAGCTGCGTGAGGATTCGCCGCTGGGGCAGATTCTCGCTGCCGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCGCGCGCGTGATCCATGATCTGGAGCGTTACCT
CAACGCCCTTGGCACCATCGCCGGCATCGCGCCGCTGCTTGGTCTGCTCGGTACGGTGCTGGGCATGATCGAGATCTTCA
GCTCCTTCATGGGCGCAGGCATGGCCAATGCGCCGATGCTCGCCGGCGGTATCTCCAAGGCCCTGATCACCACCGCAGCC
GGCCTGATGGTGGCGATCCCGGCACTGTTCTTCCATCGCTACCTGCAGCGCCGTGTCGACGAGCTGGTGGTGGGCATGGA
GCAGGAAGCGATCAAACTGGTTGAAATGGTCCAGGGTGATCGCGACGTCGACCTGGGTGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

90

100

0.9