Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QC807_RS09210 Genome accession   NZ_CP122492
Coordinates   1920328..1920984 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain a15     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1915328..1925984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC807_RS09180 dcyD 1916207..1917193 (+) 987 WP_001128242.1 D-cysteine desulfhydrase -
  QC807_RS09185 tcyL 1917208..1917876 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QC807_RS09190 tcyN 1917873..1918625 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QC807_RS09195 sdiA 1918855..1919577 (+) 723 WP_089586234.1 transcriptional regulator SdiA -
  QC807_RS09200 yecF 1919645..1919869 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QC807_RS09205 yecU 1919856..1920032 (-) 177 WP_001302050.1 protein YecU -
  QC807_RS26155 - 1920070..1920186 (-) 117 WP_001302039.1 hypothetical protein -
  QC807_RS09210 letA 1920328..1920984 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QC807_RS09215 uvrC 1920981..1922813 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QC807_RS09220 pgsA 1922870..1923418 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QC807_RS09240 yecA 1924068..1924733 (+) 666 WP_000847882.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=740570 QC807_RS09210 WP_000611335.1 1920328..1920984(+) (letA) [Escherichia coli strain a15]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=740570 QC807_RS09210 WP_000611335.1 1920328..1920984(+) (letA) [Escherichia coli strain a15]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCTAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486