Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OE648_RS06065 Genome accession   NZ_CP107544
Coordinates   1322333..1322968 (+) Length   211 a.a.
NCBI ID   WP_038364506.1    Uniprot ID   A0A5E6X0Z4
Organism   Pseudomonas moraviensis strain EFBE32     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1317333..1327968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE648_RS06045 (OE648_06045) - 1317495..1318427 (+) 933 WP_042610685.1 ABC transporter ATP-binding protein -
  OE648_RS06050 (OE648_06050) - 1318424..1319203 (+) 780 WP_039760202.1 ABC transporter permease -
  OE648_RS06055 (OE648_06055) - 1319342..1319860 (-) 519 WP_083352201.1 DUF2062 domain-containing protein -
  OE648_RS06060 (OE648_06060) comA 1319997..1322231 (+) 2235 WP_333715697.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OE648_RS06065 (OE648_06065) exbB 1322333..1322968 (+) 636 WP_038364506.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OE648_RS06070 (OE648_06070) - 1322965..1323393 (+) 429 WP_042610688.1 ExbD/TolR family protein -
  OE648_RS06075 (OE648_06075) lpxK 1323393..1324403 (+) 1011 WP_333715698.1 tetraacyldisaccharide 4'-kinase -
  OE648_RS06080 (OE648_06080) - 1324428..1324613 (+) 186 WP_003179363.1 Trm112 family protein -
  OE648_RS06085 (OE648_06085) kdsB 1324610..1325374 (+) 765 WP_065616818.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OE648_RS06090 (OE648_06090) - 1325374..1325838 (+) 465 WP_064361450.1 low molecular weight protein-tyrosine-phosphatase -
  OE648_RS06095 (OE648_06095) murB 1325835..1326854 (+) 1020 WP_333715699.1 UDP-N-acetylmuramate dehydrogenase -
  OE648_RS06100 (OE648_06100) - 1327105..1327575 (+) 471 WP_041479453.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22971.10 Da        Isoelectric Point: 6.8771

>NTDB_id=740523 OE648_RS06065 WP_038364506.1 1322333..1322968(+) (exbB) [Pseudomonas moraviensis strain EFBE32]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=740523 OE648_RS06065 WP_038364506.1 1322333..1322968(+) (exbB) [Pseudomonas moraviensis strain EFBE32]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCGGCCATGGCGATCGTTGC
CGAACGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCGGGCCTCGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAGCTCGAACGCTATGT
CAACGCGTTGGGCACCATCGCCGCTATGTCGCCGTTGCTCGGTCTGCTCGGCACTGTGCTCGGCATGATCGACATTTTCA
GTGCCTTCACCGGTTCCGGCATGACCACCAATGCATCGGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGTATCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCCGCGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E6X0Z4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844