Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OE648_RS02820 Genome accession   NZ_CP107544
Coordinates   591966..593555 (-) Length   529 a.a.
NCBI ID   WP_042610490.1    Uniprot ID   -
Organism   Pseudomonas moraviensis strain EFBE32     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 586966..598555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE648_RS02805 (OE648_02795) - 588974..589375 (+) 402 WP_042610493.1 type IV pilin protein -
  OE648_RS02810 (OE648_02800) thiO 589434..590534 (+) 1101 WP_116658389.1 glycine oxidase ThiO -
  OE648_RS02815 (OE648_02805) pilR 590623..591969 (-) 1347 WP_064364117.1 sigma-54-dependent transcriptional regulator Regulator
  OE648_RS02820 (OE648_02810) pilS 591966..593555 (-) 1590 WP_042610490.1 sensor histidine kinase Regulator
  OE648_RS02825 (OE648_02815) - 593545..593778 (-) 234 WP_039761661.1 PP0621 family protein -
  OE648_RS02830 (OE648_02820) - 593905..594921 (-) 1017 WP_064364119.1 outer membrane protein assembly factor BamD -
  OE648_RS02835 (OE648_02825) rluD 595073..596035 (+) 963 WP_042610487.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OE648_RS02840 (OE648_02830) pgeF 596032..596754 (+) 723 WP_065615660.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58639.25 Da        Isoelectric Point: 6.9043

>NTDB_id=740516 OE648_RS02820 WP_042610490.1 591966..593555(-) (pilS) [Pseudomonas moraviensis strain EFBE32]
MVAEAANADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLSFSHPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHLID
EYSPALVDRLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGETREQATER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQAEVWLALFVDPDSQLAVLEVQDNGPGVSADEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=740516 OE648_RS02820 WP_042610490.1 591966..593555(-) (pilS) [Pseudomonas moraviensis strain EFBE32]
GTGGTCGCTGAGGCCGCCAACGCCGACCAGAAACAGGCTCAGCGTCTGCTGCGCCTTTATCACCTGTACCGCTTGAGTGT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GTGGCAGCTGGCTGTATCTGATCATCAATATGCTGCTGGTGGTGTTCCTCGAAAACACCCGGCGCCCGGCGCAACTGTTC
ACTTTAGCGTTGGTCGATGTGCTGCTGTTGTGCGGCCTGTTCTACGCCGCTGGTGGCGTCGCCAGTGCGCTGGGCAATCT
GTTGGTCGTCTCGGTGGCGATCAGCAATACCCTGCTGCGCCGGCGCATCGGCCTGCTGATTGCCGCCATCGCGGCGATCG
GCATTGTCGGCCTGAGCTTTCTGCTGAGCTTCAGCCATCCCCTCAGCGCCAACGCCTACCTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTTGCCGCCTCGTTGCTGGTGCAAGGGCTGATCCGCCGCCTCGAAGTCAGTGAAACCCTCGCCGAACAGCG
CGCCAGTGAAGTGGTTGGCCTGGAAGCGCTCAACGCGTTGATCCTGCAACGCATGCGCACTGGCATTCTGGTGCTCGATG
AGCAACGCCGGGTGCAACTGGCCAATCACAGCGCGCAGAGCCTGCTCGGCCATAGCCACCTGCAAGGTCATTTGATCGAT
GAGTATTCGCCCGCGCTGGTCGATCGCCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAACGGTCTCGAGCTGCAACCAAGCTTCATCGCCCTCGAGCAGAGCCCGAACCAGCAGACCCTGGTGTTTCTCGAAG
ATCTGGCGCAAATCACCCAACAGGCGCAGCAGCTCAAACTCGCTGCGCTCGGGCGTTTGACCGCGGGCATCTCCCACGAA
ATTCGCAATCCGTTGGGCGCAATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGTCAGC
AAAGCGCACCGCAACGGCTGGACCTCAAGCCATGGCTGGAAGACTTCGTCGGCGAAACCCGCGAGCAGGCCACCGAGCGC
CAGCACATTCATCTACGGATCAATTCGGGCGACTTCACCACGCTGATGGACCCCAACCAGCTGCGGCAGATTCTCGACAA
TCTGATACGCAACGCCTGGCGGCACAGTGCCCAGTTGCACGAGCAGGCCGAAGTCTGGCTGGCGCTGTTCGTCGACCCCG
ACAGCCAGTTGGCAGTACTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGACGAGCAGGCGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599