Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QAY59_RS13655 Genome accession   NZ_CP122487
Coordinates   2736876..2737472 (+) Length   198 a.a.
NCBI ID   WP_103149823.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MRSA45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2731876..2742472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY59_RS13625 (QAY59_13585) treR 2732801..2733529 (+) 729 WP_001118675.1 trehalose operon repressor -
  QAY59_RS13635 (QAY59_13595) - 2733933..2734034 (+) 102 WP_031775041.1 hypothetical protein -
  QAY59_RS13640 (QAY59_13600) - 2734172..2734696 (+) 525 WP_001167822.1 GNAT family N-acetyltransferase -
  QAY59_RS13645 (QAY59_13605) dnaX 2734765..2736462 (+) 1698 WP_001109036.1 DNA polymerase III subunit gamma/tau -
  QAY59_RS13650 (QAY59_13610) - 2736552..2736869 (+) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  QAY59_RS13655 (QAY59_13615) recR 2736876..2737472 (+) 597 WP_103149823.1 recombination mediator RecR Machinery gene
  QAY59_RS13660 (QAY59_13620) - 2737677..2737775 (+) 99 WP_001791812.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22027.45 Da        Isoelectric Point: 4.8464

>NTDB_id=740178 QAY59_RS13655 WP_103149823.1 2736876..2737472(+) (recR) [Staphylococcus aureus strain IT-MRSA45]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKGDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=740178 QAY59_RS13655 WP_103149823.1 2736876..2737472(+) (recR) [Staphylococcus aureus strain IT-MRSA45]
ATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGGAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGCATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

76.768

100

0.768
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475