Detailed information NTG0740176

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH523_RS22385
• Genome accession: NZ_CP107468
• Coordinates: 4501310..4502110 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP_11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4496310..4507110

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH523_RS22350	gspH	4496466..4496981 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
OH523_RS22355	gspI	4496978..4497343 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
OH523_RS22360	gspJ	4497340..4497936 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
OH523_RS22365	gspK	4497933..4498919 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
OH523_RS22370	gspL	4498906..4500099 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
OH523_RS22375	-	4500092..4500577 (+)	486	WP_004151943.1	type II secretion system protein M	-
OH523_RS22380	-	4500567..4501313 (+)	747	WP_004145897.1	type II secretion system protein N	-
OH523_RS22385	pilD	4501310..4502110 (+)	801	WP_002888947.1	prepilin peptidase	Machinery gene
OH523_RS22390	hrpB	4502158..4504587 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
OH523_RS22395	thpR	4504660..4505196 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OH523_RS22400	sfsA	4505196..4505912 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OH523_RS22405	dksA	4506075..4506530 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=740176 OH523_RS22385 WP_002888947.1 4501310..4502110(+) (pilD) [Klebsiella pneumoniae strain CRKP_11]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=740176 OH523_RS22385 WP_002888947.1 4501310..4502110(+) (pilD) [Klebsiella pneumoniae strain CRKP_11]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425