Detailed information NTG0740032

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH508_RS22420
• Genome accession: NZ_CP107436
• Coordinates: 4506549..4507349 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP_17
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4501549..4512349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH508_RS22385	gspH	4501705..4502220 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
OH508_RS22390	gspI	4502217..4502582 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
OH508_RS22395	gspJ	4502579..4503175 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
OH508_RS22400	gspK	4503172..4504158 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
OH508_RS22405	gspL	4504145..4505338 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
OH508_RS22410	-	4505331..4505816 (+)	486	WP_004151943.1	type II secretion system protein M	-
OH508_RS22415	-	4505806..4506552 (+)	747	WP_004145897.1	type II secretion system protein N	-
OH508_RS22420	pilD	4506549..4507349 (+)	801	WP_002888947.1	prepilin peptidase	Machinery gene
OH508_RS22425	hrpB	4507397..4509826 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
OH508_RS22430	thpR	4509899..4510435 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OH508_RS22435	sfsA	4510435..4511151 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OH508_RS22440	dksA	4511314..4511769 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=740032 OH508_RS22420 WP_002888947.1 4506549..4507349(+) (pilD) [Klebsiella pneumoniae strain CRKP_17]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=740032 OH508_RS22420 WP_002888947.1 4506549..4507349(+) (pilD) [Klebsiella pneumoniae strain CRKP_17]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425