Detailed information NTG0739987

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH521_RS18055
• Genome accession: NZ_CP107426
• Coordinates: 3688775..3689575 (-)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP_19
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3683775..3694575

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH521_RS18035	dksA	3684355..3684810 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
OH521_RS18040	sfsA	3684973..3685689 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OH521_RS18045	thpR	3685689..3686225 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OH521_RS18050	hrpB	3686298..3688727 (+)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
OH521_RS18055	pilD	3688775..3689575 (-)	801	WP_002888947.1	prepilin peptidase	Machinery gene
OH521_RS18060	-	3689572..3690318 (-)	747	WP_004145897.1	type II secretion system protein N	-
OH521_RS18065	-	3690308..3690793 (-)	486	WP_004151943.1	type II secretion system protein M	-
OH521_RS18070	gspL	3690786..3691979 (-)	1194	WP_004151942.1	type II secretion system protein GspL	-
OH521_RS18075	gspK	3691966..3692952 (-)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
OH521_RS18080	gspJ	3692949..3693545 (-)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
OH521_RS18085	gspI	3693542..3693907 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
OH521_RS18090	gspH	3693904..3694419 (-)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=739987 OH521_RS18055 WP_002888947.1 3688775..3689575(-) (pilD) [Klebsiella pneumoniae strain CRKP_19]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=739987 OH521_RS18055 WP_002888947.1 3688775..3689575(-) (pilD) [Klebsiella pneumoniae strain CRKP_19]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425