Detailed information NTG0739912

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH525_RS22090
• Genome accession: NZ_CP107412
• Coordinates: 4445752..4446552 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP_22
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4440752..4451552

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH525_RS22055	gspH	4440908..4441423 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
OH525_RS22060	gspI	4441420..4441785 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
OH525_RS22065	gspJ	4441782..4442378 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
OH525_RS22070	gspK	4442375..4443361 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
OH525_RS22075	gspL	4443348..4444541 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
OH525_RS22080	-	4444534..4445019 (+)	486	WP_004151943.1	type II secretion system protein M	-
OH525_RS22085	-	4445009..4445755 (+)	747	WP_004145897.1	type II secretion system protein N	-
OH525_RS22090	pilD	4445752..4446552 (+)	801	WP_002888947.1	prepilin peptidase	Machinery gene
OH525_RS22095	hrpB	4446600..4449029 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
OH525_RS22100	thpR	4449102..4449638 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OH525_RS22105	sfsA	4449638..4450354 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OH525_RS22110	dksA	4450517..4450972 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=739912 OH525_RS22090 WP_002888947.1 4445752..4446552(+) (pilD) [Klebsiella pneumoniae strain CRKP_22]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=739912 OH525_RS22090 WP_002888947.1 4445752..4446552(+) (pilD) [Klebsiella pneumoniae strain CRKP_22]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425