Detailed information NTG0739850

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH516_RS08875
• Genome accession: NZ_CP107403
• Coordinates: 1773473..1774273 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP_25
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1768473..1779273

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH516_RS08840	gspH	1768629..1769144 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
OH516_RS08845	gspI	1769141..1769506 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
OH516_RS08850	gspJ	1769503..1770099 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
OH516_RS08855	gspK	1770096..1771082 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
OH516_RS08860	gspL	1771069..1772262 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
OH516_RS08865	-	1772255..1772740 (+)	486	WP_004151943.1	type II secretion system protein M	-
OH516_RS08870	-	1772730..1773476 (+)	747	WP_004145897.1	type II secretion system protein N	-
OH516_RS08875	pilD	1773473..1774273 (+)	801	WP_002888947.1	prepilin peptidase	Machinery gene
OH516_RS08880	hrpB	1774321..1776750 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
OH516_RS08885	thpR	1776823..1777359 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OH516_RS08890	sfsA	1777359..1778075 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OH516_RS08895	dksA	1778238..1778693 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=739850 OH516_RS08875 WP_002888947.1 1773473..1774273(+) (pilD) [Klebsiella pneumoniae strain CRKP_25]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=739850 OH516_RS08875 WP_002888947.1 1773473..1774273(+) (pilD) [Klebsiella pneumoniae strain CRKP_25]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425