Detailed information NTG0739840

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH520_RS21870
• Genome accession: NZ_CP107398
• Coordinates: 4406294..4407094 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP_26
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4401294..4412094

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH520_RS21835	gspH	4401450..4401965 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
OH520_RS21840	gspI	4401962..4402327 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
OH520_RS21845	gspJ	4402324..4402920 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
OH520_RS21850	gspK	4402917..4403903 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
OH520_RS21855	gspL	4403890..4405083 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
OH520_RS21860	-	4405076..4405561 (+)	486	WP_004151943.1	type II secretion system protein M	-
OH520_RS21865	-	4405551..4406297 (+)	747	WP_004145897.1	type II secretion system protein N	-
OH520_RS21870	pilD	4406294..4407094 (+)	801	WP_002888947.1	prepilin peptidase	Machinery gene
OH520_RS21875	hrpB	4407142..4409571 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
OH520_RS21880	thpR	4409644..4410180 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OH520_RS21885	sfsA	4410180..4410896 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OH520_RS21890	dksA	4411059..4411514 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=739840 OH520_RS21870 WP_002888947.1 4406294..4407094(+) (pilD) [Klebsiella pneumoniae strain CRKP_26]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=739840 OH520_RS21870 WP_002888947.1 4406294..4407094(+) (pilD) [Klebsiella pneumoniae strain CRKP_26]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425