Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   P8T65_RS20335 Genome accession   NZ_CP122458
Coordinates   4668038..4668637 (-) Length   199 a.a.
NCBI ID   WP_184905496.1    Uniprot ID   -
Organism   Streptomyces sp. 11x1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4663038..4673637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8T65_RS20315 (P8T65_20285) - 4664410..4664910 (-) 501 WP_316726697.1 SgcJ/EcaC family oxidoreductase -
  P8T65_RS20320 (P8T65_20290) - 4665101..4665940 (+) 840 WP_316726698.1 alpha/beta hydrolase -
  P8T65_RS20325 (P8T65_20295) - 4666282..4667217 (-) 936 WP_316726699.1 M56 family metallopeptidase -
  P8T65_RS20330 (P8T65_20300) - 4667380..4668045 (-) 666 WP_184905494.1 DUF5063 domain-containing protein -
  P8T65_RS20335 (P8T65_20305) recR 4668038..4668637 (-) 600 WP_184905496.1 recombination mediator RecR Machinery gene
  P8T65_RS20340 (P8T65_20310) - 4668842..4669186 (-) 345 WP_316726700.1 YbaB/EbfC family nucleoid-associated protein -
  P8T65_RS20345 (P8T65_20315) - 4669466..4670233 (+) 768 WP_316726701.1 SLATT domain-containing protein -
  P8T65_RS20350 (P8T65_20320) - 4670431..4673109 (-) 2679 WP_316731647.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21760.13 Da        Isoelectric Point: 4.9909

>NTDB_id=739700 P8T65_RS20335 WP_184905496.1 4668038..4668637(-) (recR) [Streptomyces sp. 11x1]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALLEVKAKVRFCATCGNVAQEELCNICRDPRRDPSV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=739700 P8T65_RS20335 WP_184905496.1 4668038..4668637(-) (recR) [Streptomyces sp. 11x1]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGACTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCCACGGACGTACGGCGGCTCGCGCAGGCCCTCCTCGAGGTGAAGGCGAAGGTCC
GTTTCTGCGCGACCTGCGGCAACGTGGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCCGTCCGTC
ATCTGTGTCGTCGAGGAACCGAAGGACGTCGTCGCGATCGAGCGCACCCGCGAGTTCCGGGGCAAGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGACCTGCGCATACGGGAGCTGCTGGCCCGCCTGGCCGACGGCA
CGGTCACCGAGCTGATCCTGGCCACGGACCCGAACCTGGAAGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAA
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGATTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462