Detailed information NTG0739675

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH511_RS18000
• Genome accession: NZ_CP107363
• Coordinates: 3676749..3677549 (-)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP_33
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3671749..3682549

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH511_RS17980	dksA	3672329..3672784 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
OH511_RS17985	sfsA	3672947..3673663 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OH511_RS17990	thpR	3673663..3674199 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OH511_RS17995	hrpB	3674272..3676701 (+)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
OH511_RS18000	pilD	3676749..3677549 (-)	801	WP_002888947.1	prepilin peptidase	Machinery gene
OH511_RS18005	-	3677546..3678292 (-)	747	WP_004145897.1	type II secretion system protein N	-
OH511_RS18010	-	3678282..3678767 (-)	486	WP_004151943.1	type II secretion system protein M	-
OH511_RS18015	gspL	3678760..3679953 (-)	1194	WP_004151942.1	type II secretion system protein GspL	-
OH511_RS18020	gspK	3679940..3680926 (-)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
OH511_RS18025	gspJ	3680923..3681519 (-)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
OH511_RS18030	gspI	3681516..3681881 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
OH511_RS18035	gspH	3681878..3682393 (-)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=739675 OH511_RS18000 WP_002888947.1 3676749..3677549(-) (pilD) [Klebsiella pneumoniae strain CRKP_33]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=739675 OH511_RS18000 WP_002888947.1 3676749..3677549(-) (pilD) [Klebsiella pneumoniae strain CRKP_33]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425