Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QBY76_RS19620 Genome accession   NZ_CP122454
Coordinates   4038836..4039573 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 82.0311     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4033836..4044573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBY76_RS19605 (QBY76_19605) clpC 4034290..4036863 (-) 2574 WP_001539382.1 ATP-dependent chaperone ClpB Regulator
  QBY76_RS19610 (QBY76_19610) yfiH 4036993..4037724 (-) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  QBY76_RS19615 (QBY76_19615) rluD 4037721..4038701 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QBY76_RS19620 (QBY76_19620) comL 4038836..4039573 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QBY76_RS19625 (QBY76_19625) raiA 4039843..4040184 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QBY76_RS19630 (QBY76_19630) pheL 4040288..4040335 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QBY76_RS19635 (QBY76_19635) pheA 4040434..4041594 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  QBY76_RS19640 (QBY76_19640) tyrA 4041637..4042758 (-) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QBY76_RS19645 (QBY76_19645) aroF 4042769..4043839 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QBY76_RS19650 (QBY76_19650) yfiL 4044049..4044414 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=739634 QBY76_RS19620 WP_000197686.1 4038836..4039573(+) (comL) [Escherichia coli strain 82.0311]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=739634 QBY76_RS19620 WP_000197686.1 4038836..4039573(+) (comL) [Escherichia coli strain 82.0311]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376