Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QBY76_RS15950 Genome accession   NZ_CP122454
Coordinates   3200223..3200879 (-) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain 82.0311     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3195223..3205879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBY76_RS15920 (QBY76_15920) yecA 3196475..3197140 (-) 666 WP_000847877.1 UPF0149 family protein YecA -
  QBY76_RS15940 (QBY76_15940) pgsA 3197789..3198337 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QBY76_RS15945 (QBY76_15945) uvrC 3198394..3200226 (-) 1833 WP_087598034.1 excinuclease ABC subunit UvrC Machinery gene
  QBY76_RS15950 (QBY76_15950) letA 3200223..3200879 (-) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QBY76_RS15955 (QBY76_15955) yecU 3201175..3201351 (+) 177 WP_001307856.1 protein YecU -
  QBY76_RS15960 (QBY76_15960) yecF 3201338..3201562 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  QBY76_RS15965 (QBY76_15965) sdiA 3201630..3202352 (-) 723 WP_001154255.1 transcriptional regulator SdiA -
  QBY76_RS15970 (QBY76_15970) tcyN 3202582..3203334 (-) 753 WP_001273000.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QBY76_RS15975 (QBY76_15975) tcyL 3203331..3203999 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  QBY76_RS15980 (QBY76_15980) dcyD 3204014..3205000 (-) 987 WP_001128237.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=739621 QBY76_RS15950 WP_000611328.1 3200223..3200879(-) (letA) [Escherichia coli strain 82.0311]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=739621 QBY76_RS15950 WP_000611328.1 3200223..3200879(-) (letA) [Escherichia coli strain 82.0311]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGAGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTTAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482