Detailed information NTG0739561

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH503_RS08765
• Genome accession: NZ_CP107341
• Coordinates: 1751423..1752223 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP_37
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1746423..1757223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH503_RS08730	gspH	1746579..1747094 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
OH503_RS08735	gspI	1747091..1747456 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
OH503_RS08740	gspJ	1747453..1748049 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
OH503_RS08745	gspK	1748046..1749032 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
OH503_RS08750	gspL	1749019..1750212 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
OH503_RS08755	-	1750205..1750690 (+)	486	WP_004151943.1	type II secretion system protein M	-
OH503_RS08760	-	1750680..1751426 (+)	747	WP_004145897.1	type II secretion system protein N	-
OH503_RS08765	pilD	1751423..1752223 (+)	801	WP_002888947.1	prepilin peptidase	Machinery gene
OH503_RS08770	hrpB	1752271..1754700 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
OH503_RS08775	thpR	1754773..1755309 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OH503_RS08780	sfsA	1755309..1756025 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OH503_RS08785	dksA	1756188..1756643 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=739561 OH503_RS08765 WP_002888947.1 1751423..1752223(+) (pilD) [Klebsiella pneumoniae strain CRKP_37]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=739561 OH503_RS08765 WP_002888947.1 1751423..1752223(+) (pilD) [Klebsiella pneumoniae strain CRKP_37]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425