Detailed information NTG0739465

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH506_RS09015
• Genome accession: NZ_CP107312
• Coordinates: 1790882..1791682 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP_41
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1785882..1796682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH506_RS08980	gspH	1786038..1786553 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
OH506_RS08985	gspI	1786550..1786915 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
OH506_RS08990	gspJ	1786912..1787508 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
OH506_RS08995	gspK	1787505..1788491 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
OH506_RS09000	gspL	1788478..1789671 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
OH506_RS09005	-	1789664..1790149 (+)	486	WP_004151943.1	type II secretion system protein M	-
OH506_RS09010	-	1790139..1790885 (+)	747	WP_004145897.1	type II secretion system protein N	-
OH506_RS09015	pilD	1790882..1791682 (+)	801	WP_002888947.1	prepilin peptidase	Machinery gene
OH506_RS09020	hrpB	1791730..1794159 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
OH506_RS09025	thpR	1794232..1794768 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OH506_RS09030	sfsA	1794768..1795484 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OH506_RS09035	dksA	1795647..1796102 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=739465 OH506_RS09015 WP_002888947.1 1790882..1791682(+) (pilD) [Klebsiella pneumoniae strain CRKP_41]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=739465 OH506_RS09015 WP_002888947.1 1790882..1791682(+) (pilD) [Klebsiella pneumoniae strain CRKP_41]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425