Detailed information NTG0739455

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH538_RS22290
• Genome accession: NZ_CP107308
• Coordinates: 4483800..4484600 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP_42
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4478800..4489600

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH538_RS22255	gspH	4478956..4479471 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
OH538_RS22260	gspI	4479468..4479833 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
OH538_RS22265	gspJ	4479830..4480426 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
OH538_RS22270	gspK	4480423..4481409 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
OH538_RS22275	gspL	4481396..4482589 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
OH538_RS22280	-	4482582..4483067 (+)	486	WP_004151943.1	type II secretion system protein M	-
OH538_RS22285	-	4483057..4483803 (+)	747	WP_004145897.1	type II secretion system protein N	-
OH538_RS22290	pilD	4483800..4484600 (+)	801	WP_002888947.1	prepilin peptidase	Machinery gene
OH538_RS22295	hrpB	4484648..4487077 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
OH538_RS22300	thpR	4487150..4487686 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OH538_RS22305	sfsA	4487686..4488402 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OH538_RS22310	dksA	4488565..4489020 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=739455 OH538_RS22290 WP_002888947.1 4483800..4484600(+) (pilD) [Klebsiella pneumoniae strain CRKP_42]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=739455 OH538_RS22290 WP_002888947.1 4483800..4484600(+) (pilD) [Klebsiella pneumoniae strain CRKP_42]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425