Detailed information NTG0739434

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH504_RS18090
• Genome accession: NZ_CP107303
• Coordinates: 3690521..3691321 (-)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP_43
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3685521..3696321

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH504_RS18070	dksA	3686101..3686556 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
OH504_RS18075	sfsA	3686719..3687435 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OH504_RS18080	thpR	3687435..3687971 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OH504_RS18085	hrpB	3688044..3690473 (+)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
OH504_RS18090	pilD	3690521..3691321 (-)	801	WP_002888947.1	prepilin peptidase	Machinery gene
OH504_RS18095	-	3691318..3692064 (-)	747	WP_004145897.1	type II secretion system protein N	-
OH504_RS18100	-	3692054..3692539 (-)	486	WP_004151943.1	type II secretion system protein M	-
OH504_RS18105	gspL	3692532..3693725 (-)	1194	WP_004151942.1	type II secretion system protein GspL	-
OH504_RS18110	gspK	3693712..3694698 (-)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
OH504_RS18115	gspJ	3694695..3695291 (-)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
OH504_RS18120	gspI	3695288..3695653 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
OH504_RS18125	gspH	3695650..3696165 (-)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=739434 OH504_RS18090 WP_002888947.1 3690521..3691321(-) (pilD) [Klebsiella pneumoniae strain CRKP_43]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=739434 OH504_RS18090 WP_002888947.1 3690521..3691321(-) (pilD) [Klebsiella pneumoniae strain CRKP_43]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425